Construct: ORF TRCN0000474117

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006482.1_s317c1
Derived from:
ccsbBroadEn_15702
DNA Barcode:
GCTATCACGCCCCTCGGAGTTGTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TNIP1 (10318)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474117
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001252390.2 99.9% 99.8% 443G>A
2 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001252391.2 99.9% 99.8% 443G>A
3 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001258454.2 99.9% 99.8% 443G>A
4 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_006058.5 99.9% 99.8% 443G>A
5 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001252392.2 98.1% 97.8% (many diffs)
6 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001252393.2 98.1% 97.8% (many diffs)
7 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001252385.1 95.5% 93.8% 443G>A;1779_1795del;1857_1858ins68
8 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_005268355.2 95.5% 93.8% 443G>A;1779_1795del;1857_1858ins68
9 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_017008950.2 95.5% 93.8% 443G>A;1779_1795del;1857_1858ins68
10 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001252386.2 91.6% 91.5% 0_1ins159;284G>A
11 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_017008945.2 90.6% 88.6% (many diffs)
12 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_017008946.2 90.6% 88.6% (many diffs)
13 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_017008947.2 90.6% 88.6% (many diffs)
14 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001258455.1 89.8% 89.7% 443G>A;1586_1587ins192
15 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001364487.2 89.8% 89.7% 443G>A;1586_1587ins192
16 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001364486.2 89.8% 89.5% (many diffs)
17 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_006714752.3 88.1% 87.8% (many diffs)
18 human 10318 TNIP1 TNFAIP3 interacting protein 1 NM_001258456.1 83.7% 83.9% (many diffs)
19 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_017008948.2 83% 81.1% (many diffs)
20 human 10318 TNIP1 TNFAIP3 interacting protein 1 XM_017008949.2 81.4% 79.6% (many diffs)
21 mouse 57783 Tnip1 TNFAIP3 interacting protein 1 NM_001199275.2 83.1% 82.5% (many diffs)
22 mouse 57783 Tnip1 TNFAIP3 interacting protein 1 NM_021327.4 83.1% 82.5% (many diffs)
23 mouse 57783 Tnip1 TNFAIP3 interacting protein 1 XM_006533846.3 83.1% 82.5% (many diffs)
24 mouse 57783 Tnip1 TNFAIP3 interacting protein 1 NM_001271456.1 81.9% 81.3% (many diffs)
25 mouse 57783 Tnip1 TNFAIP3 interacting protein 1 XM_011249162.1 81.9% 81.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1974
ORF length:
1908
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga agggagagga ccgtaccgga tctacgaccc tgggggcagc gtgccctcag
121gagaggcatc cgcagctttt gagcgcctag tgaaggagaa ttcccggctg aaggaaaaaa
181tgcaagggat aaagatgtta ggggagcttt tggaagagtc ccagatggaa gcgaccaggc
241tccggcagaa ggcagaggag ctagtgaagg acaacgagct gctcccacca ccttctccct
301ccttgggctc cttcgacccc ctggctgagc tcacaggaaa ggactcaaat gtcacagcat
361ctcccacagc ccctgcatgc cccagtgaca agccagcacc agtccagaag cctccatcca
421gtggcacctc ctctgaattt gaagtggtca ctcctgagga gcagaattca ccagagagca
481gcagccatgc caatgcgatg gcgctggacc ccctgccccg tgaggacggc aacctgatgc
541tgcacctgca gcgcctggag accacgctga gtgtgtgtgc cgaggagccg gaccacggcc
601agctcttcac ccacctgggc cgcatggccc tggagttcaa ccgactggca tccaaggtgc
661acaagaatga gcagcgcacc tccattctgc agaccctgtg tgagcagctt cggaaggaga
721acgaggctct gaaggccaag ttggataagg gcctggaaca gcgggatcag gctgccgaga
781ggctgcggga ggaaaatttg gagctcaaga agttgttgat gagcaatggc aacaaagagg
841gtgcgtctgg gcggccaggc tcaccgaaga tggaagggac aggcaagaag gcagtggctg
901gacagcagca ggctagtgtg acggcaggta aggtcccaga ggtggtggcc ttgggcgcag
961ccgagaagaa ggtgaagatg ctggagcagc agcgcagtga gctgctggaa gtgaacaagc
1021agtgggacca gcatttccgg tccatgaagc agcagtatga gcagaagatc actgagctgc
1081gtcagaagct ggctgatttg cagaagcagg tgactgacct ggaggccgag cgggagcaga
1141agcagcgtga ctttgaccgc aagctcctcc tggccaagtc caagattgaa atggaggaga
1201ccgacaagga gcagctgaca gcagaggcca aggagctgcg ccaaaaggtc aagtacctgc
1261aggatcagct gagcccactc acccgacagc gtgagtacca ggaaaaggag atccagcggc
1321tcaacaaggc cctggaggaa gcactgagca tccaaacccc gccatcatct ccaccaacag
1381catttgggag cccagaagga gcaggggccc tcctaaggaa acaggagctg gtcacgcaga
1441atgagttgct gaaacagcag gtgaagatct tcgaggagga cttccagagg gagcgcagtg
1501atcgtgagcg catgaatgag gagaaggaag agctgaagaa gcaagtggag aagctgcagg
1561cccaggtcac cctgtcaaat gcccagctaa aagcattcaa agatgaggag aaggcaagag
1621aagccctcag acagcagaag aggaaagcaa aggcctcagg agagcgttac catgtggagc
1681cccacccaga acatctctgc ggggcctacc cctacgccta cccgcccatg ccagccatgg
1741tgccacacca tggcttcgag gactggtccc agatccgcta cccccctccc cccatggcca
1801tggagcaccc gcccccactc cccaactcgc gcctcTTCCA TCTGCCGGAA TACACCTGGC
1861GTCTACCCTG TGGAGGGGTT CGAAATCCAA ATCAGAGCTC CCAAGTGATG GACCCTCCCA
1921CAGCCAGGCC TACAGAACCA GAGTCTCCAA AAAATGACCG TGAGGGGCCT CAGTGCCCAA
1981CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
2041ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
2101TATCTTGTGG AAAGGACGAG CTATCACGCC CCTCGGAGTT GTTACGCGTT AAGTCgacaa
2161tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)

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