Construct: ORF TRCN0000474121
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012087.1_s317c1
- Derived from:
- ccsbBroadEn_12179
- DNA Barcode:
- GAACTTTATTTTACAAACTGTAGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DZANK1 (55184)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474121
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55184 | DZANK1 | double zinc ribbon and anky... | NR_160274.1 | 41.7% | (many diffs) | |
| 2 | human | 55184 | DZANK1 | double zinc ribbon and anky... | NR_160273.1 | 41.2% | (many diffs) | |
| 3 | human | 55184 | DZANK1 | double zinc ribbon and anky... | NM_001099407.1 | 32.7% | 23.8% | (many diffs) |
| 4 | human | 55184 | DZANK1 | double zinc ribbon and anky... | NM_001367611.1 | 32.4% | 23.6% | (many diffs) |
| 5 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_017027915.2 | 32.4% | 23.6% | (many diffs) |
| 6 | human | 55184 | DZANK1 | double zinc ribbon and anky... | NM_001367612.1 | 32.2% | 23.5% | (many diffs) |
| 7 | human | 55184 | DZANK1 | double zinc ribbon and anky... | NM_001367613.1 | 32.2% | 23.5% | (many diffs) |
| 8 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_017027913.2 | 31.9% | 23.3% | (many diffs) |
| 9 | human | 55184 | DZANK1 | double zinc ribbon and anky... | NM_001351684.2 | 31.9% | 23.4% | (many diffs) |
| 10 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_017027912.2 | 31.7% | 23.1% | (many diffs) |
| 11 | human | 55184 | DZANK1 | double zinc ribbon and anky... | NM_001367614.1 | 31.6% | 23.2% | (many diffs) |
| 12 | human | 55184 | DZANK1 | double zinc ribbon and anky... | NM_001367617.1 | 31.6% | 23.2% | (many diffs) |
| 13 | human | 55184 | DZANK1 | double zinc ribbon and anky... | NM_001367618.1 | 31.6% | 23.2% | (many diffs) |
| 14 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_011529271.3 | 31.6% | 23.2% | (many diffs) |
| 15 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_011529272.2 | 31.6% | 23.2% | (many diffs) |
| 16 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_017027910.1 | 31.6% | 23.2% | (many diffs) |
| 17 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_017027911.1 | 31.6% | 23.2% | (many diffs) |
| 18 | human | 55184 | DZANK1 | double zinc ribbon and anky... | NM_001351683.2 | 31.5% | 23.1% | (many diffs) |
| 19 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_011529268.2 | 31.2% | 22.9% | (many diffs) |
| 20 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_006723584.2 | 28.1% | 28.5% | (many diffs) |
| 21 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_017027916.2 | 27.6% | 28.1% | (many diffs) |
| 22 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_024451934.1 | 18.5% | 5.7% | (many diffs) |
| 23 | human | 55184 | DZANK1 | double zinc ribbon and anky... | NM_001367619.1 | 17.4% | 5.7% | (many diffs) |
| 24 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_017027918.2 | 17.2% | 5.7% | (many diffs) |
| 25 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_017027919.2 | 17.2% | 5.7% | (many diffs) |
| 26 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XR_001754314.2 | 16% | (many diffs) | |
| 27 | human | 55184 | DZANK1 | double zinc ribbon and anky... | NM_018152.3 | 13.1% | 3.6% | 0_1ins451;282T>C;291_1755del |
| 28 | human | 55184 | DZANK1 | double zinc ribbon and anky... | XM_017027920.2 | 13.1% | 3.6% | 0_1ins451;282T>C;291_1755del |
| 29 | mouse | 241688 | Dzank1 | double zinc ribbon and anky... | XM_006499516.3 | 33% | 21.2% | (many diffs) |
| 30 | mouse | 241688 | Dzank1 | double zinc ribbon and anky... | XM_006499515.3 | 31% | 20% | (many diffs) |
| 31 | mouse | 241688 | Dzank1 | double zinc ribbon and anky... | XM_006499514.3 | 29.4% | 19% | (many diffs) |
| 32 | mouse | 241688 | Dzank1 | double zinc ribbon and anky... | XM_011239534.2 | 28.8% | 18.6% | (many diffs) |
| 33 | mouse | 241688 | Dzank1 | double zinc ribbon and anky... | XM_011239533.2 | 28.3% | 20.4% | (many diffs) |
| 34 | mouse | 241688 | Dzank1 | double zinc ribbon and anky... | XM_006499512.3 | 27.8% | 18% | (many diffs) |
| 35 | mouse | 241688 | Dzank1 | double zinc ribbon and anky... | NM_172859.2 | 27.8% | 18% | (many diffs) |
| 36 | mouse | 241688 | Dzank1 | double zinc ribbon and anky... | XM_011239532.2 | 27.3% | 17.7% | (many diffs) |
| 37 | mouse | 241688 | Dzank1 | double zinc ribbon and anky... | XM_006499511.3 | 27.3% | 17.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 807
- ORF length:
- 741
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgac tgctggttca gtgtgtgtcc ctcagatcat accactacga gtgcctcagc 121 ctggaaaagc taaccatgaa attgataaca atacgctttt ggaaatgaaa tcagacactc 181 cagatgtcaa catatattat actctggatg gcagcaaacc tgaatttcta aagagaattg 241 gttatgggga aaataacaca tttaagtata taaaacctat tactctgcct GATGGAAAAA 301 TACAAGTTAA AGCTATTGCT GTCTCTAAAG ACTGCAGACA GAGTGGCATT GCGACAAAGG 361 TGTTTCACGT AGACTATGAA CCACCAAATA TAGTCTCTCC TGAAGACAAT GTTGAAAATG 421 TTCTCAAAGA TTCTTCAAGG CAGGAATTCA AAAATGGATT TGTTGGATCA AAACTAAAGA 481 AAAAATATAA GAACTCTGAA AATCAACGCA GCTGGAATGT TAACCTTAGA AAGTTTCCAG 541 TCCCCCGGTT TTGCACACGT AAGCGGTCAG AAGTGTTTGA CAAGCACGGA GATAATGAGA 601 ATTCAAAGGG AGACAGACTT TCTCAAGTGT GCCCACTGCC TTGCCCCCCG GCCATCAGAT 661 CCCTTTGCTC GCTTCTGTCA AGAATGTGGC TCTCCTGTCC CACCCATATT TGGCTGTCGT 721 CTCCCACCCC CAGAAGGAGC TCAGATGGGC TTGTGTGCAG AATGCAGAAG CTTGGTACCC 781 ATGAACACTC CCATCTGCGT GGTGTGTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG 841 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 901 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAGAACTTTA 961 TTTTACAAAC TGTAGTACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1021 aagatt