Construct: ORF TRCN0000474698

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014796.1_s317c1
Derived from:
ccsbBroadEn_03100
DNA Barcode:
TTGTATGGGTTAGAATCATCGGTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ST8SIA5 (29906)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474698
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29906 ST8SIA5 ST8 alpha-N-acetyl-neuramin... NM_013305.6 100% 100%
2 human 29906 ST8SIA5 ST8 alpha-N-acetyl-neuramin... NM_001307987.2 91.7% 91.7% 131_132ins93
3 human 29906 ST8SIA5 ST8 alpha-N-acetyl-neuramin... NM_001307986.2 91.2% 91.2% 130_237del
4 human 29906 ST8SIA5 ST8 alpha-N-acetyl-neuramin... XM_017025715.1 80.3% 80.3% 0_1ins222
5 human 29906 ST8SIA5 ST8 alpha-N-acetyl-neuramin... XM_017025716.1 60.6% 60.6% 0_1ins444
6 mouse 225742 St8sia5 ST8 alpha-N-acetyl-neuramin... NM_153124.2 85.6% 85.1% (many diffs)
7 mouse 225742 St8sia5 ST8 alpha-N-acetyl-neuramin... XM_006526430.3 85.4% 84.6% (many diffs)
8 mouse 225742 St8sia5 ST8 alpha-N-acetyl-neuramin... NM_013666.2 78.1% 77.6% (many diffs)
9 mouse 225742 St8sia5 ST8 alpha-N-acetyl-neuramin... XM_006526429.3 77.9% 77.2% (many diffs)
10 mouse 225742 St8sia5 ST8 alpha-N-acetyl-neuramin... XM_006526431.3 51.9% 51.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1197
ORF length:
1128
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcgctacgcg gacccctcgg ccaaccggga tttgttgggg agccgaactt
121tgctcttcat cttcatctgc gcctttgcct tggtgacctt gctgcaacag atcctgtatg
181gcaggaacta cattaagagg tactttgaat tttatgaggg gccttttgaa tataactcca
241caagatgcct ggagctgagg cacgaaatat tggaagtgaa ggtgctgtcc atggtgaagc
301agtcagagct gttcgacagg tggaagagcc tccagatgtg caaatgggcg atgaacatct
361ctgaggccaa ccagttcaag tctactctgt ccaggtgctg caacgcccct gcctttctct
421tcaccaccca gaagaacact cccctgggga caaagctcaa gtatgaggtg gacaccagtg
481gcatctacca catcaaccag gagatcttcc gcatgtttcc caaggacatg ccctactacc
541ggtcccagtt taagaagtgt gctgtagtgg gcaacggagg catcttgaag aacagccgct
601gcgggaggga gatcaacagc gccgacttcg tcttccggtg caacctgccc cccatctcag
661agaagtacac catGGATGTG GGGGTGAAGA CGGATGTGGT CACTGTGAAC CCCAGCATCA
721TCACAGAGAG GTTCCACAAG CTGGAGAAGT GGCGGCGGCC GTTCTATCGC GTGCTGCAGG
781TGTACGAGAA CGCGTCGGTG CTGCTGCCTG CCTTCTACAA CACGCGCAAC ACCGACGTGT
841CCATCCGCGT CAAGTACGTG CTGGACGACT TCGAATCGCC GCAAGCTGTC TACTACTTCC
901ATCCGCAGTA CCTGGTCAAC GTGTCGCGCT ACTGGCTCAG CCTGGGGGTG CGCGCCAAGC
961GCATCAGCAC CGGCCTCATT CTGGTCACTG CGGCGCTGGA GCTCTGTGAG GAGGTGCACC
1021TCTTTGGCTT CTGGGCCTTC CCCATGAACC CCTCGGGCCT CTACATCACT CACCACTACT
1081ATGACAACGT CAAGCCGCGT CCCGGCTTCC ACGCCATGCC CTCTGAGATC TTCAACTTCC
1141TGCACTTGCA CAGCCGAGGC ATCCTCCGCG TGCACACGGG CACCTGCAGC TGCTGCTTGC
1201CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1261TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1321ATATATCTTG TGGAAAGGAC GATTGTATGG GTTAGAATCA TCGGTCACGC GTTAAGTCga
1381caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)