Construct: ORF TRCN0000474781

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011153.1_s317c1
Derived from:
ccsbBroadEn_08617
DNA Barcode:
GTTGTCATAGGATTGTCCTTGGGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ALG1 (56052)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474781
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56052 ALG1 ALG1 chitobiosyldiphosphodo... NM_019109.5 99.8% 99.5% 650A>G;800G>A
2 human 56052 ALG1 ALG1 chitobiosyldiphosphodo... XM_017023457.2 97% 96.7% 650A>G;800G>A;862_863ins39
3 human 56052 ALG1 ALG1 chitobiosyldiphosphodo... NM_001330504.1 75.9% 75.6% 0_1ins333;317A>G;467G>A
4 human 56052 ALG1 ALG1 chitobiosyldiphosphodo... XM_017023458.1 75.9% 75.6% 0_1ins333;317A>G;467G>A
5 human 56052 ALG1 ALG1 chitobiosyldiphosphodo... XR_932882.3 71.7% (many diffs)
6 human 650368 TSSC2 tumor suppressing subtransf... NR_024248.1 48% (many diffs)
7 human 644974 ALG1L2 ALG1 chitobiosyldiphosphodo... NM_001136152.1 43.1% 39.4% (many diffs)
8 human 200810 ALG1L ALG1 chitobiosyldiphosphodo... XM_017005844.2 34.6% 32.5% (many diffs)
9 human 200810 ALG1L ALG1 chitobiosyldiphosphodo... XM_017005845.1 34.6% 32.5% (many diffs)
10 human 200810 ALG1L ALG1 chitobiosyldiphosphodo... NM_001195223.1 34.5% 32.5% (many diffs)
11 human 200810 ALG1L ALG1 chitobiosyldiphosphodo... XM_017005846.2 31.1% 29.6% (many diffs)
12 human 200810 ALG1L ALG1 chitobiosyldiphosphodo... XM_017005847.1 31.1% 29.6% (many diffs)
13 human 200810 ALG1L ALG1 chitobiosyldiphosphodo... NM_001015050.2 31% 29.6% (many diffs)
14 human 200810 ALG1L ALG1 chitobiosyldiphosphodo... XM_024453383.1 25.6% 24.7% (many diffs)
15 human 644974 ALG1L2 ALG1 chitobiosyldiphosphodo... XM_024453711.1 25.6% 20.8% (many diffs)
16 human 200810 ALG1L ALG1 chitobiosyldiphosphodo... XM_024453384.1 25.5% 24.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1458
ORF length:
1392
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggcctcatgc ttggtcctgc tggcgctgtg tctgctgctg ccgctgctgc
121tgctgggagg atggaagcgc tggcgccggg ggcgggcggc ccggcatgta gtagcggtgg
181tgctgggcga cgtgggccgc agcccccgta tgcagtacca cgcgctgtcg ttggccatgc
241acggcttctc ggtgaccctc ctggggttct gcaactccaa accccatgat gagctcttgc
301agaacaacag aattcagatt gtggggttga cagaacttca gagtcttgca gttgggcccc
361gagttttcca gtacggagtc aaagttgtac ttcaggctat gtacttgctg tggaagttga
421tgtggaggga gccaggtgcc tatatctttc tccagaaccc cccaggtctg cctagcattg
481ctgtctgctg gttcgtgggc tgcctttgtg gaagcaagct cgtcattgac tggcacaact
541atggctactc catcatgggt ctggtgcatg gccccaacca tcccctcgtt ctgctggcca
601agtggtacga gaagttcttt gggcgcctgt cccacctgaa cctgtgtgtt accaatgcta
661tgcgagaaga cctggcggat aactggcaca tcagggctgt gaccgtctac gacaggcccg
721catctttctt taaagagaca cctctggacc tgcagcaccg gctcttcatg aagctgggca
781gcatgcactc tccgttcagg gcccgctcag aacctgagga cccagtcacg gagcggtcgg
841ccttcacgga gcgggatgct gggaacgggc tggtgacgcG TCTCCGTGAG CGGCCAGCCC
901TGCTGGTCAG CAGCACGAGC TGGACAGAGG ACGAAGACTT CTCCATCCTG CTGGCAGCTT
961TAGAAAAGTT TGAACAACTG ACTCTTGATG GACACAACCT TCCTTCTCTC GTCTGTGTGA
1021TAACAGGCAA AGGGCCTCTG AGGGAGTATT ATAGCCGCCT CATCCACCAG AAGCACTTCC
1081AGCACATCCA GGTCTGCACC CCCTGGCTGG AGGCCGAGGA CTACCCCCTG CTTCTAGGGT
1141CGGCGGACCT GGGTGTCTGT CTGCACACGT CCTCCAGTGG CCTGGACCTG CCCATGAAGG
1201TGGTGGACAT GTTCGGGTGC TGTTTGCCTG TGTGTGCTGT GAACTTCAAG TGTTTACATG
1261AGCTGGTGAA ACATGAAGAA AATGGCCTGG TCTTTGAGGA CTCAGAGGAA CTGGCAGCTC
1321AGCTGCAGAT GCTTTTCTCA AACTTTCCTG ATCCTGCGGG CAAGCTAAAC CAGTTCCGGA
1381AGAACCTGCG GGAGTCGCAG CAGCTCCGAT GGGATGAGAG CTGGGTGCAG ACTGTGCTCC
1441CTTTGGTTAT GGACACATAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1501TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1561GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAGTTGTCA TAGGATTGTC
1621CTTGGGTACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)