Construct: ORF TRCN0000475008

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007002.1_s317c1
Derived from:
ccsbBroadEn_05108
DNA Barcode:
CGCAAACGCTTCGTTCCAGATGTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPTC7 (160760)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475008
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 160760 PPTC7 PTC7 protein phosphatase ho... NM_139283.2 100% 100%
2 human 160760 PPTC7 PTC7 protein phosphatase ho... XM_024448869.1 83.5% 81.2% 724_725ins130;762_763insTAGTGGCTGAGTATACAGAC
3 human 160760 PPTC7 PTC7 protein phosphatase ho... XM_024448870.1 81.8% 80.5% (many diffs)
4 human 160760 PPTC7 PTC7 protein phosphatase ho... NR_138550.2 14.2% 1_287del;689_690ins199;1001_4795del
5 mouse 320717 Pptc7 PTC7 protein phosphatase ho... NM_177242.4 87.6% 97% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
981
ORF length:
912
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gttctcggtc ctctcgtacg ggcggctggt ggcccgcgcc gtgctcggcg
121gcctctcgca gaccgacccc agggccggcg gcggcggcgg cggcgactac ggactggtga
181cggccggctg cggcttcggg aaggacttcc gtaagggcct cctcaagaag ggcgcgtgct
241acggggacga cgcgtgcttc gtggcccggc accgttccgc ggacgtgctc ggggttgcag
301atggtgtagg aggctggaga gactatggag ttgatccatc tcaattctca gggactttaa
361tgcggacgtg tgaacgttta gtaaaagaag gacggttcgt acctagtaat cccattggaa
421ttctcaccac aagctactgt gagttgctgc aaaataaagt ccctttgctc ggtagcagca
481ccgcctgcat tgtggtgctg gacagaaCCA GCCACCGCTT ACACACAGCA AACCTGGGCG
541ATTCAGGCTT CCTGGTTGTC AGGGGTGGTG AAGTCGTGCA CCGATCAGAT GAGCAGCAGC
601ATTACTTCAA CACTCCATTC CAGCTCTCAA TCGCTCCCCC TGAAGCCGAG GGAGTCGTCT
661TGAGCGACAG TCCGGATGCT GCTGATAGCA CGTCTTTCGA TGTCCAGCTA GGAGACATTA
721TCCTGACGGC AACAGATGGA CTCTTTGACA ACATGCCTGA TTATATGATT CTTCAGGAGC
781TAAAAAAGTT AAAGAATTCA AATTATGAGA GTATACAACA GACTGCCAGA AGCATTGCTG
841AGCAAGCTCA TGAGCTGGCC TATGACCCAA ATTATATGTC ACCTTTTGCA CAGTTTGCAT
901GTGACAATGG ATTGAATGTG AGAGGTGGAA AGCCAGATGA CATCACCGTC CTTCTTTCAA
961TAGTGGCTGA GTATACAGAC TTGCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1021CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1081AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACGCA AACGCTTCGT
1141TCCAGATGTG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)