Transcript: Human NR_138550.2

Homo sapiens PTC7 protein phosphatase homolog (PPTC7), transcript variant 2, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
PPTC7 (160760)
Length:
4795
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_138550.2
NBCI Gene record:
PPTC7 (160760)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_138550.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000315056 TTGACAACATGCCTGATTATA pLKO_005 765 3UTR 100% 15.000 21.000 N PPTC7 n/a
2 TRCN0000315055 GGACGGTTCGTACCTAGTAAT pLKO_005 609 3UTR 100% 13.200 18.480 N PPTC7 n/a
3 TRCN0000080896 CCCAAATTATATGTCACCTTT pLKO.1 886 3UTR 100% 4.950 6.930 N Pptc7 n/a
4 TRCN0000381127 GCTGCTGATAGCACGTCTTTC pLKO_005 698 3UTR 100% 10.800 8.640 N PPTC7 n/a
5 TRCN0000002705 CCACATTTCTTTGCCACTGAT pLKO.1 1080 3UTR 100% 4.950 3.960 N PPTC7 n/a
6 TRCN0000315121 CCACATTTCTTTGCCACTGAT pLKO_005 1080 3UTR 100% 4.950 3.960 N PPTC7 n/a
7 TRCN0000080895 GCTGGCCTATGACCCAAATTA pLKO.1 874 3UTR 100% 15.000 10.500 N Pptc7 n/a
8 TRCN0000318133 GCTGGCCTATGACCCAAATTA pLKO_005 874 3UTR 100% 15.000 10.500 N Pptc7 n/a
9 TRCN0000002704 CTCAATTCTCAGGGACTTTAA pLKO.1 559 3UTR 100% 13.200 9.240 N PPTC7 n/a
10 TRCN0000315120 CTCAATTCTCAGGGACTTTAA pLKO_005 559 3UTR 100% 13.200 9.240 N PPTC7 n/a
11 TRCN0000379897 GTCCAGCTAGGAGACATTATC pLKO_005 722 3UTR 100% 13.200 9.240 N PPTC7 n/a
12 TRCN0000315054 TTCAATAGTGGCTGAGTATAC pLKO_005 976 3UTR 100% 10.800 7.560 N PPTC7 n/a
13 TRCN0000002701 ACCCAAATTATATGTCACCTT pLKO.1 885 3UTR 100% 2.640 1.848 N PPTC7 n/a
14 TRCN0000002703 GAGACATTATCCTGACGGCAA pLKO.1 732 3UTR 100% 2.160 1.512 N PPTC7 n/a
15 TRCN0000379830 GAGCTGGCCTATGACCCAAAT pLKO_005 872 3UTR 100% 10.800 6.480 N PPTC7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_138550.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05108 pDONR223 100% 14.2% None 1_287del;689_690ins199;1001_4795del n/a
2 ccsbBroad304_05108 pLX_304 0% 14.2% V5 1_287del;689_690ins199;1001_4795del n/a
3 TRCN0000475008 CGCAAACGCTTCGTTCCAGATGTG pLX_317 51.7% 14.2% V5 1_287del;689_690ins199;1001_4795del n/a
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