Construct: ORF TRCN0000475047

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009655.1_s317c1
Derived from:
ccsbBroadEn_12408
DNA Barcode:
AACGTCATTATTTCTCCGTAGGCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLAMF7 (57823)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475047
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57823 SLAMF7 SLAM family member 7 NM_001282592.2 100% 100%
2 human 57823 SLAMF7 SLAM family member 7 XM_011509829.1 95.7% 95.7% 648_686del
3 human 57823 SLAMF7 SLAM family member 7 NM_021181.5 88.3% 77.8% 770_873del;993_1005del
4 human 57823 SLAMF7 SLAM family member 7 XM_011509828.1 85% 75% 648_686del;809_912del;1032_1044del
5 human 57823 SLAMF7 SLAM family member 7 XM_024448757.1 73% 64.6% 645_854del;980_1083del;1203_1215del
6 human 57823 SLAMF7 SLAM family member 7 NM_001282589.1 64.2% 48.3% (many diffs)
7 human 57823 SLAMF7 SLAM family member 7 NM_001282596.2 63.8% 63.8% 54_55ins321
8 human 57823 SLAMF7 SLAM family member 7 NM_001282590.2 56.4% 46.6% 54_55ins321;449_552del;672_684del
9 human 57823 SLAMF7 SLAM family member 7 NM_001282588.1 55.7% 55.7% 375_376ins393
10 human 57823 SLAMF7 SLAM family member 7 NM_001282594.1 54.3% 44.9% (many diffs)
11 human 57823 SLAMF7 SLAM family member 7 NM_001282591.1 53.4% 35.9% (many diffs)
12 human 57823 SLAMF7 SLAM family member 7 NM_001282593.1 50.3% 50.3% 54_55ins321;324_325ins120
13 human 57823 SLAMF7 SLAM family member 7 NM_001282595.1 48.3% 38.7% 0_1ins402;368_471del;591_603del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
954
ORF length:
888
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tggttcccca acatgcctca ccctcatcta tatcctttgg cagctcacag
121ggtcagcagc ctctggaccc gtgaaagagc tggtcggttc cgttggtggg gccgtgactt
181tccccctgaa gtccaaagta aagcaagttg actctattgt ctggaccttc aacacaaccc
241ctcttgtcac catacagcca gaagggggca ctatcatagt gacccaaaat cgtaataggg
301agagagtaga cttcccagat ggaggctact ccctgaagct cagcaaactg aagaagaatg
361actcagggat ctactatgtg gggatataca gctcatcact ccagcagccc tccacccagg
421agtacgtgct gcatgtctac gagcacctgt caaagcctaa agtcaccatg ggtctgcaga
481gcaataagaa tggcacctgt gtgaccaatc tgacatgctg catggaacat ggggaagagg
541atgtgattta tacctggaag gccctggggc aagcagccaa tgagtcccat aatgggtcca
601TCCTCCCCAT CTCCTGGAGA TGGGGAGAAA GTGATATGAC CTTCATCTGC GTTGCCAGGA
661ACCCTGTCAG CAGAAACTTC TCAAGCCCCA TCCTTGCCAG GAAGCTCTGT GAAGGTGCTG
721CTGATGACCC AGATTCCTCC ATGGTCCTCC TGTGTCTCCT GTTGGTGCCC CTCCTGCTCA
781GTCTCTTTGT ACTGGGGCTA TTTCTTTGGT TTCTGAAGAG AGAGAGACAA GAAGAGAACA
841ATCCTAAAGG AAGATCCAGC AAATACGGTT TACTCCACTG TGGAAATACC GAAAAAGATG
901GAAAATCCCC ACTCACTGCT CACGATGCCA GACACACCAA GGCTATTTGC CTATGCCCAA
961CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1021ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1081TATCTTGTGG AAAGGACGAA ACGTCATTAT TTCTCCGTAG GCCACGCGTT AAGTCgacaa
1141tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)