Construct: ORF TRCN0000475194

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007293.1_s317c1
Derived from:
ccsbBroadEn_13452
DNA Barcode:
CTACGGATGGCCGCCCGCTAGTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDR27 (253769)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475194
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 253769 WDR27 WD repeat domain 27 NM_001202550.1 99.9% 99.7% 1019G>A;1243A>T
2 human 253769 WDR27 WD repeat domain 27 NM_001350623.2 91.1% 90.9% 329_330ins192;827G>A;1051A>T
3 human 253769 WDR27 WD repeat domain 27 XM_017010669.2 91.1% 90.9% 329_330ins192;827G>A;1051A>T
4 human 253769 WDR27 WD repeat domain 27 XM_017010660.2 85.1% 84.9% 330_710del;1400G>A;1624A>T
5 human 253769 WDR27 WD repeat domain 27 XM_011535692.3 83.6% 83% (many diffs)
6 human 253769 WDR27 WD repeat domain 27 XM_011535687.3 83.4% 82.7% (many diffs)
7 human 253769 WDR27 WD repeat domain 27 XM_011535688.3 83.4% 82.7% (many diffs)
8 human 253769 WDR27 WD repeat domain 27 XM_011535689.3 83.4% 82.7% (many diffs)
9 human 253769 WDR27 WD repeat domain 27 XM_011535691.3 83.4% 83% (many diffs)
10 human 253769 WDR27 WD repeat domain 27 XM_017010662.2 83.4% 83% (many diffs)
11 human 253769 WDR27 WD repeat domain 27 XM_011535690.3 83.2% 82% (many diffs)
12 human 253769 WDR27 WD repeat domain 27 XM_011535685.3 82.9% 82.3% (many diffs)
13 human 253769 WDR27 WD repeat domain 27 XM_017010659.2 82.7% 82.5% (many diffs)
14 human 253769 WDR27 WD repeat domain 27 XM_011535684.3 82.6% 80.8% (many diffs)
15 human 253769 WDR27 WD repeat domain 27 XM_011535682.3 81.2% 79.7% (many diffs)
16 human 253769 WDR27 WD repeat domain 27 XM_017010658.2 81.2% 79.7% (many diffs)
17 human 253769 WDR27 WD repeat domain 27 NM_182552.5 80.9% 78.9% (many diffs)
18 human 253769 WDR27 WD repeat domain 27 XM_011535693.3 74.8% 72.5% (many diffs)
19 human 253769 WDR27 WD repeat domain 27 XM_017010663.2 72.6% 70.9% (many diffs)
20 human 253769 WDR27 WD repeat domain 27 XM_017010664.2 72.6% 70.9% (many diffs)
21 human 253769 WDR27 WD repeat domain 27 XM_017010665.2 72.6% 70.9% (many diffs)
22 human 253769 WDR27 WD repeat domain 27 XM_017010666.2 72.6% 70.9% (many diffs)
23 human 253769 WDR27 WD repeat domain 27 XM_017010667.2 71.9% 71.5% (many diffs)
24 human 253769 WDR27 WD repeat domain 27 XM_017010668.2 71.6% 71.5% (many diffs)
25 human 253769 WDR27 WD repeat domain 27 XM_011535694.3 71.6% 71.4% (many diffs)
26 human 253769 WDR27 WD repeat domain 27 XM_017010670.2 57.8% 57.6% (many diffs)
27 human 253769 WDR27 WD repeat domain 27 XM_017010671.2 57.8% 57.6% (many diffs)
28 human 253769 WDR27 WD repeat domain 27 XM_017010672.2 54.1% 52.9% (many diffs)
29 human 253769 WDR27 WD repeat domain 27 XM_017010673.2 53.4% 52.8% (many diffs)
30 human 253769 WDR27 WD repeat domain 27 NR_146875.1 52.9% (many diffs)
31 human 253769 WDR27 WD repeat domain 27 NM_001350624.1 46.7% 44.1% (many diffs)
32 human 253769 WDR27 WD repeat domain 27 NM_001350625.1 46.7% 44.1% (many diffs)
33 human 253769 WDR27 WD repeat domain 27 XM_011535696.3 43% 40.6% (many diffs)
34 human 253769 WDR27 WD repeat domain 27 XM_011535697.3 40.1% 39.5% (many diffs)
35 human 253769 WDR27 WD repeat domain 27 NR_146876.1 33.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2259
ORF length:
2190
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggaaaatccc caagacattt tctcaagtaa tggtggctgt ctaagtgata
121tagttataga aaaatacctg gttgaatcca aggagtctgt gtctcatgtt cagcttgctt
181gcagcatgca ggactgtgct ttccctttgg atggaactga actttgtata tggaacacta
241aggatccttc tcatcagctt ctaatcctac gaggacacca tcagccaatt actgctatgg
301cttttggaaa taaagtgaac ccacttctaa tctgctcagc atcactggat tatgttataa
361tgtggaacct ggatgaatgt agagagaaag tacttcaagc atatcctctt ctcagtttat
421tcattgatgc agaaagcagg cagctggtca ccgggtgtgc tgacggccag ctttggatct
481tcagtttgat ggatggacac cattatcgtc gtgtggcacg ggttgaccta aggaagaaga
541cagagacttt ctccacaaga agggttaagt ctgggctgtg cagccagcca gaagaaagcc
601agcttccctc tacaagtgct ctgggaaaag gagagcaggt tgaagtaaca tttcctgtac
661tgagacttgc accctgtgat ctctcactca tcccaaattc tgcatgtgga tgtctttctt
721ctgagaacac ccgatgtgtg tggatcggaa gctcagtggg cttattcgta tttaacctgg
781caaacctgga agtggaagct gctttgtatt acaaggattt ccagagcctc agcatcctgc
841tggccggatc gtgtgccctg aggaaccgca ctgcggatca aaaggtgctg tgcttgctgg
901cctccctctt tggcgggaag attgccgtgt tggagatcaa cccggccgcg ctagtcaggg
961ctcagcagtg ccccagcatg gggcagagcc tctcggtgcc agccagctcc tgtgtcctac
1021cgacctctcc actgtatctg ggaattgcca aggagaagag taccaaggct gctagtgaac
1081agcgacatgc tgcacggaac gtcatgaagg accaacgcct ggttttccat agtaaagtta
1141ggtcatctgg ttatgcgtca gcaccacatg taactatgtt ttcaccaaag accaacatca
1201agagtgaggg gaaaggatct tcaaggagca ggagcagctg cgcacgggag gcataccccg
1261tggagtgcgc tgtgcccacc aagcccggcc cccaggtcgc tgccgccccc tcctgcacac
1321gtgtatgctg catccagtac tcaggagatg ggcagtggct ggcctgtggg ttggccaacc
1381atctgttact cgtttttgat gccagcctga ctgggacacc tgctgtgttt tcaggtcacg
1441acggggcagt gaatgccgtg tgctggagcc aggaccggag gtggctgctc tctgcggccc
1501gggacgggac cctgcgaatg tggtcggctc gtggggcaga gctcgcactg cttctgggca
1561aagacatgtt ttctaaacct atacagtctg cacagttcta ttatatagat gcctttatat
1621tgttatcttc tggccctgaa tttcagctac tgaggtatca cattgacact tgcaaagatg
1681agattaagag atataaacag aagagcaagt ccaagctgat ttgcaggctc tccacgacgg
1741gtgcagtaga catgaccagt ttatcggcag tcaacgactt ttattcccac atcgtactcg
1801cagctggccg gaacaggacc gtggaagtgt ttgacctcaa cgccggctgc agtgcagcgg
1861tgatagcgga agcccactca cggcctgtcc atcaaatctg ccaaaataaa ggttcatcat
1921ttacaaccca acagccTCAG GCTTATAACC TTTTCCTGAC CACGGCCATT GGCGATGGGA
1981TGAGACTGTG GGACCTGAGA ACCCTGAGGT GTGAGCGCCA CTTTGAAGGG CATCCAACCC
2041GCGGCTATCC ATGTGGAATC GCTTTCAGTC CTTGTGGACG ATTCGCGGCT TGTGGGGCCG
2101AGGACAGACA CGCTTACGTG TATGAAATGG GCTCAAGCAC GTTTTCTCAC CGGCTGGCTG
2161GGCACACAGA CACTGTCACT GGAGTGGCCT TCAACCCATC AGCGCCCCAG CTTGCCACAG
2221CTACCTTGGA TGGTAAACTC CAGCTCTTTC TAGCTGAGTT GCCAACTTTC TTGTACAAAG
2281TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
2341GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
2401ACGACTACGG ATGGCCGCCC GCTAGTGCAC GCGTTAAGTC gacaatcaac ctctggatta
2461caaaatttgt gaaagatt

Download FASTA (ORF) (Full)