Construct: ORF TRCN0000475492

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002458.1_s317c1
Derived from:
ccsbBroadEn_12833
DNA Barcode:
TTAGCCAACGAATTTCATCAAGCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ST6GAL2 (84620)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475492
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84620 ST6GAL2 ST6 beta-galactoside alpha-... NM_001142352.2 97.6% 97.6% 1_33del
2 human 84620 ST6GAL2 ST6 beta-galactoside alpha-... XM_011512001.2 97.6% 97.6% 1_33del
3 human 84620 ST6GAL2 ST6 beta-galactoside alpha-... XM_011512000.2 92.7% 90.9% (many diffs)
4 human 84620 ST6GAL2 ST6 beta-galactoside alpha-... XM_017005110.1 92.3% 88.1% (many diffs)
5 human 84620 ST6GAL2 ST6 beta-galactoside alpha-... NM_001142351.2 84% 81.5% (many diffs)
6 human 84620 ST6GAL2 ST6 beta-galactoside alpha-... NM_001322362.2 84% 81.5% (many diffs)
7 human 84620 ST6GAL2 ST6 beta-galactoside alpha-... NM_032528.3 84% 81.5% (many diffs)
8 human 84620 ST6GAL2 ST6 beta-galactoside alpha-... XM_006712802.1 84% 81.5% (many diffs)
9 human 84620 ST6GAL2 ST6 beta-galactoside alpha-... XM_011511999.2 84% 81.5% (many diffs)
10 human 84620 ST6GAL2 ST6 beta-galactoside alpha-... XR_923046.2 70.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1431
ORF length:
1365
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct tttcggaata ttcgcttggg ggctcctctt tttgctgatt ttcatctact
121tcaccgacag caaccccgct gagcctgtac ccagctccct ctccttcctg gagaccagga
181ggctcctgcc ggtgcagggg aagcagcggg ccatcatggg cgccgcacat gagccctccc
241cgcctggggg cctggacgca cgccaggcgc tgccccgcgc ccacccagcc ggttcctttc
301atgcggggcc tggagacctg cagaaatggg cccagtccca agatgggttt gaacataaag
361agtttttttc atcccaggtg gggagaaaat ctcaaagtgc tttctacccg gaggatgacg
421actacttttt tgctgctggt cagccagggt ggcacagcca cactcagggg acattgggat
481tcccttcccc cggggagcca ggcccacggg agggggcttt tccggctgca caggtccaga
541ggaggcgggt gaagaagagg caccggaggc agagaaggag ccacgtgttg gaggagggcg
601acgacggcga caggctgtac tcctccatgt ccagggcctt cctgtaccgg ctctggaagg
661ggaacgtctc ttccaaaatg ctgaacccgc gcctgcagaa ggcgatgaag gattacctga
721ccgccaacaa gcacggggtg cgcttccgcg ggaagcggga ggccgggctg agcagggcac
781agctgctgtg ccagctgcgg agccgcgcgc gcgtgcggac gctggacggc accgaggcgc
841ccttttctgc gctgggctgg cggcgcctgg tgcccgccgt gcccctgagc cagctgcacc
901cccgcggcct gcgcagctgc gctgtcgtca tgtctgcagg cgcaatcctc aactcttcct
961tgggcgagga aatagattct catgatgcgg ttttgagatt taactctgct cctacacgtg
1021gttatgagaa agatgttggg aataaaacca ccatacgcat cattaattcG CAGATTCTGA
1081CCAACCCCAG CCATCACTTC ATTGACAGTT CACTGTATAA AGACGTCATT TTGGTGGCCT
1141GGGACCCTGC CCCATATTCC GCAAATCTTA ACCTGTGGTA CAAAAAACCG GATTACAACC
1201TGTTCACTCC ATATATTCAG CATCGTCAGA GAAACCCAAA TCAGCCATTT TACATTCTTC
1261ATCCTAAATT TATATGGCAG CTCTGGGATA TTATCCAGGA GAACACTAAA GAGAAGATTC
1321AACCAAACCC ACCATCTTCT GGTTTCATTG GCTCATTTGT AAAAATTGGC CATATCAGAG
1381CTTGCAGTGA GCCGAGATCA CGCGACTGCA CTCCAGCCTG GACGACAGAG TGCCCAACTT
1441TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1501CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1561CTTGTGGAAA GGACGATTAG CCAACGAATT TCATCAAGCA ACGCGTTAAG TCgacaatca
1621acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)

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