Construct: ORF TRCN0000475543

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013381.1_s317c1
Derived from:
ccsbBroadEn_05007
DNA Barcode:
CCGCCGCTTGCTTCTCATTCCCTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PROSER3 (148137)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475543
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 148137 PROSER3 proline and serine rich 3 NM_001039887.3 100% 100%
2 human 148137 PROSER3 proline and serine rich 3 XM_011526536.3 66.8% 64.1% (many diffs)
3 human 148137 PROSER3 proline and serine rich 3 NM_001367856.1 66.2% 66.2% 957_1688del
4 human 148137 PROSER3 proline and serine rich 3 XM_011526533.3 65.6% 65.6% 957_1709del
5 human 148137 PROSER3 proline and serine rich 3 XM_011526534.1 65.6% 65.6% 957_1709del
6 human 148137 PROSER3 proline and serine rich 3 XM_011526532.1 61.7% 60.5% (many diffs)
7 human 148137 PROSER3 proline and serine rich 3 XM_011526530.1 57.3% 56.3% (many diffs)
8 human 148137 PROSER3 proline and serine rich 3 XM_011526528.1 56.8% 55.8% (many diffs)
9 human 148137 PROSER3 proline and serine rich 3 XM_011526529.3 56.7% 55.7% (many diffs)
10 human 148137 PROSER3 proline and serine rich 3 XM_011526531.1 55.5% 54.5% (many diffs)
11 human 148137 PROSER3 proline and serine rich 3 XM_024451384.1 46.2% 45.2% (many diffs)
12 human 148137 PROSER3 proline and serine rich 3 XM_011526535.2 44.4% 43% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1509
ORF length:
1440
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggaccgcagc ctgccagttt tctccattca agatagtccc tttggagatg
121cgcccctggg tcgaagccac tactggccat cccagagcca gacctggtgt cccaagaccc
181tgagcccatc caggtctcag agatccaggc tcccacaagc tcccaaggct ctagccacag
241gtcccaactc ccctgagctg tttgaggagt cctggccatc cagttcaggg accccctccc
301tgcccagcac cactgaggga cagatgtggg cctccccagc acccaccctg attgacagcg
361gggactccgt ggtggccaag tatataaaca ggttccgcca ggctcagccc accagtcgag
421aggagcgcca gcctgcaggc ccaaccccag ctgacttttg gtggctgcag tctgactctc
481cagaccccag cagtcaaagt gcagcagcag gagccaacaa accagaagga agaccccata
541cagctgtccc tactgcggtc aacgtgacca gtgcatccca tgctgtggct ccccttcagg
601aaataaagca gaacctccac acatggaact catccctgct ggacctggag acgctgagcc
661tacagagcag agctgccagg ctgctcaaac gcagcaaagc ctccatctcc tcctcctcct
721ccctcagccc cagcgatgcc agcacttcct cattccccac cagctctgat ggcctctctc
781ccttctcgga gaccttcatc cctgactcca gcaagggcct tggccccagg gcacccgcat
841ccccggcacc agcccaggcc cagaccccca cccctgctcc agccccagcc tcctcccaag
901caccccttcg gccagaggat gacattctgt accagtggcg gcagcggcgg aagcttgaac
961aggctcaggg aagcaagggt gacagagctt gggtgccgcc tctgacccct gccctccgca
1021cgttggccga gtctctgaaa gccaaggcct tgccgcccgc agcggggtca gtgatacgga
1081agagcgaagc cactccttcc cctggagcct gcctgcagcc cgaggtccca ctctctccag
1141ctgagcaggc aaccacagtc aaggcctcgc cgccagcctt ccaggtgggg tctccggagg
1201ccctggcccc gcccccgccc gctgctgacc acgccccctc ggaggccctg cttgcccagg
1261ccgccctgct gctgcaggct gcagaagacT CCGACGGCAG CGAGTTCCAG GACGATCCCG
1321TGCTGCAGGT GCTAAGAGCC CATAGGGCAG AGCTGAGTCG GCAGAAAAGG GAAGCGGATG
1381CCCGATTATC GTTCCTGTTG GACCAGGCTG AAGACCTGGG ATCTTGGTCC CCTCCAGCCG
1441GGTCGCCCCC TAGGTCCCCA AGGAGGCTGC TAAGAAGGGA AGGAGATTCC CTGGAGGCCA
1501GAAGACTTTT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1561CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1621TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACCGCCG CTTGCTTCTC ATTCCCTTAC
1681GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)