Construct: ORF TRCN0000475660

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008434.1_s317c1
Derived from:
ccsbBroadEn_15867
DNA Barcode:
TCTACATAGTCTGGTTCCCGAGGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBC1D13 (54662)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475660
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54662 TBC1D13 TBC1 domain family member 13 NM_018201.5 99.9% 99.7% 569T>C
2 human 54662 TBC1D13 TBC1 domain family member 13 XM_005252060.2 80.9% 80.7% 0_1ins228;341T>C
3 human 54662 TBC1D13 TBC1 domain family member 13 NM_001286772.1 68.7% 68.7% 543_544ins375
4 mouse 70296 Tbc1d13 TBC1 domain family, member 13 NM_146252.3 90.4% 97.7% (many diffs)
5 mouse 70296 Tbc1d13 TBC1 domain family, member 13 XM_006498320.2 73% 79.5% (many diffs)
6 mouse 70296 Tbc1d13 TBC1 domain family, member 13 XM_006498321.2 73% 79.5% (many diffs)
7 mouse 70296 Tbc1d13 TBC1 domain family, member 13 XM_006498322.2 73% 79.5% (many diffs)
8 mouse 70296 Tbc1d13 TBC1 domain family, member 13 XM_017319254.1 73% 79.5% (many diffs)
9 mouse 70296 Tbc1d13 TBC1 domain family, member 13 XM_006498323.3 51.5% 53.2% (many diffs)
10 mouse 70296 Tbc1d13 TBC1 domain family, member 13 XM_006498324.2 49.8% 53.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1269
ORF length:
1200
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gtcaagtctg cacaagagcc gaattgcaga tttccaggat gtcctgaagg
121agccctcaat tgcattggaa aagctgcggg aactcagctt tagtggcatc ccctgtgagg
181gcggactgcg gtgcctctgc tggaagattc tcttgaacta ccttcccttg gagagagcct
241catggacctc catcctggcc aagcagaggg agctgtatgc ccagttcctg agggaaatga
301tcatccagcc tggcattgcc aaggccaaca tgggtgtgtc cagggaggat gtgacttttg
361aggaccatcc actcaacccc aaccctgaca gccggtggaa cacgtacttc aaggacaacg
421aggtgctgct gcagatcgac aaagatgtcc ggaggttgtg cccagacatt tccttcttcc
481agagggccac tgactaccct tgcctcctca tcctggaccc ccagaatgag tttgaaaccc
541ttcgtaagag agtggaacag acaacactga aatctcagac ggtggcccgg aaccggagtg
601gggtcacaaa tatgagctcc ccacacaaga actctgcgcc atcatcccta aatgagtatg
661aggtgctgcc caatggctgt gaggcccact gggaggtggt ggagcggatc ctgttcatct
721acgccaagct caaccctggc atcgcttatg tgcaaggcat gaatgaaatc gtggggcccc
781tctactacac ctttgccacc gaccccaata gtgagtggaa agagcacgcc gaggcagaca
841cctttttctg cttcaccaac ctcatggccg agatccggga caactttatc aagagcctgg
901atgactcgca gtgtggcatc accTACAAGA TGGAGAAGGT TTACTCCACC TTGAAAGATA
961AGGATGTGGA GCTCTACCTG AAACTGCAAG AGCAGAACAT CAAGCCTCAG TTCTTTGCCT
1021TCCGCTGGCT GACACTGCTG CTGTCCCAGG AGTTCTTGCT GCCTGACGTC ATCCGCATCT
1081GGGACTCCCT CTTCGCCGAT GACAACCGCT TTGACTTCCT CCTCCTCGTC TGCTGCGCCA
1141TGCTCATGCT GATCCGGGAG CAGTTGCTGG AAGGGGACTT CACTGTGAAT ATGCGGCTGC
1201TGCAGGACTA CCCCATCACA GATGTCTGCC AGATCCTGCA GAAAGCCAAG GAGCTCCAAG
1261ACTCAAAGTT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1321CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1381TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGATCTACA TAGTCTGGTT CCCGAGGGAC
1441GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)