Construct: ORF TRCN0000475687

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000211.1_s317c1
Derived from:
ccsbBroadEn_08619
DNA Barcode:
CCGTTATCTACAGATAATCAAGTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHGB3 (56102)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475687
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56102 PCDHGB3 protocadherin gamma subfami... NM_018924.5 99.9% 100% 2721G>A
2 human 56102 PCDHGB3 protocadherin gamma subfami... NM_032097.3 86.5% 86.2% (many diffs)
3 human 5098 PCDHGC3 protocadherin gamma subfami... NM_032403.3 13.7% 13.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2856
ORF length:
2787
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gggaaatagc tccggatgga ggggcccagc agggcagagg cgaatgctat
121ttctcttcct gctctctttg ttagaccagg ctctctccga accgatccgc tacgctattc
181ccgaggagct ggacaggggc tcgctggtag ggaacctcgc caaggacctg gggtttggcg
241tgggggattt acctactagg aacctgcggg ttattgcaga gaagaaattc tttaccgtga
301gccccgaaaa tgggaactta cttgtgagcg accgtataga ccgagaggag atttgtggca
361agaagtcgac gtgtgttctg gaatttgaaa tggttgctga aaagccttta aacttttttc
421atgtaactgt gctgatccag gatattaacg acaacccacc gacctttagc caaaatatca
481ctgagctgga aatcagcgaa ctggctctca ctggagccac atttgccctg gaatctgcgc
541aagatcctga tgtaggtgtc aattcgctgc agcagtacta cctcagccct gatccgcact
601tctctttgat tcagaaggag aacctggatg gcagtaggta cccagagcta gtactgaaag
661cacccctgga cagggaagag cagccacatc accacctggt cctcacagct gtggatgggg
721gcgagccctc cagaagctgt accacccaga tcagggtaat tgtcgcagat gcaaatgata
781accccccagt atttactcag gacatgtaca gggtcaatgt tgcagagaac ctgcccgctg
841gctcctccgt attaaaagtg atggccattg acatggatga gggcatcaat gccgaaatca
901tctatgcctt catcaatatt ggcaaggaag tgagacaact gttcaagctg gacagtaaaa
961cgggggaact caccactatt ggagaactgg actttgaaga gagagatagc tacacaattg
1021gggtggaagc aaaggatggt ggacatcaca ctgcatattg taaagtacag atagatattt
1081cagatgaaaa tgacaatgcc ccggagataa ccctggcttc tgaatcccaa catatacaag
1141aagatgctga gctggggact gccgttgccc tgatcaaaac acatgatcta gattctggat
1201ttaatggaga aatcctatgc caactaaaag gaaacttccc ctttaaaatc gttcaagata
1261ccaaaaacac atacaggttg gtgacagatg gagccctgga ccgggagcag atcccagaat
1321acaatgtgac gatcacagct accgacaaag gcaatccacc gctctcctcc agcaagacca
1381tcactctgca catccttgat gtcaacgaca acgttcccgt tttccaccag gcctcctaca
1441ccgtgcatgt agctgagaac aatccgcctg gagcctccat tgcgcatgtc agagcctcgg
1501atcccgactt gggacctaat ggccttgtct cctactacat cgtggccagt gacctggagc
1561cgcgggagct gtcgtcctac gtgtccgtga gcgcgcggag cggggtggtg ttcgcgcagc
1621gagccttcga ccacgagcag ctgcgtgcct tcgagctcac tctgcaggcc cgcgaccagg
1681gctcgcctac gctcagcgcc aacgtgagcc tgcgcgtgtt ggtggacgac cgcaacgaca
1741atgcaccgct ggtgctgtac ccagctctgg ggcccgaagg ctctgcgctc ttcgatatgg
1801tgccgcgctc tgcagagcct ggctacctgg tgaccaaggt ggtggcggtg gacgcagact
1861cgggatacaa cgcctggctg tcctaccaca ttgtgcaggc cagcgagccc gggctgttca
1921gcctgggcct gcgcacgggt gaggtgcgca cggcgcgtac cttgggcgac agggaggccg
1981cccgccagcg cctgctggtc actgtgcgtg atggaggaca gcagcctctt tcagccaccg
2041tcatgctgca cctaatcttc gcagatagct tgcaagagat acaacctgac cttagcgacc
2101gccccactcc ctctgaccct caggcggagc tacagtttca cctagtagtg gcgttggcct
2161tgatctcagt gctcttcctc ctcgcggtga ttctggcaat ctccctgcgc ctgcgatgct
2221cctccagacc cgccactgag ggctactttc agcctggtgt ctgcttcaag actgtacctg
2281gagttctccc cacctacagc gaaaggactt tgccttattc ctacaatccg tgtgctgcct
2341cacattcctc aaacaccgag tttaaatttc tcaatataaa ggctgaaaat gctgcaccac
2401aagatcttct atgtgatgaa gcctcttggt ttgaaagtaa tgacaatcca gaaatgcctt
2461ctaattcagg caatttgcaa aagcaagccc cgcccaacac ggactggcgt ttctcTCAGG
2521CCCAGAGACC CGGCACCAGC GGCTCCCAAA ATGGCGATGA CACCGGCACC TGGCCCAACA
2581ACCAGTTTGA CACAGAGATG CTGCAAGCCA TGATCTTGGC GTCCGCCAGT GAAGCTGCTG
2641ATGGGAGCTC CACCCTGGGA GGGGGTGCCG GCACCATGGG ATTGAGCGCC CGCTACGGAC
2701CCCAGTTCAC CCTGCAGCAC GTGCCCGACT ACCGCCAGAA TGTCTACATC CCAGGCAGCA
2761ATGCCACACT GACCAACGCA GCTGGCAAAC GGGATGGCAA GGCCCCAGCA GGTGGCAATG
2821GCAACAAGAA GAAGTCGGGC AAGAAGGAGA AGAAGTTGCC AACTTTCTTG TACAAAGTGG
2881TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
2941CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
3001ACCGTTATCT ACAGATAATC AAGTCACGCG TTAAGTCgac aatcaacctc tggattacaa
3061aatttgtgaa agatt

Download FASTA (ORF) (Full)