Construct: ORF TRCN0000475954

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010712.1_s317c1
Derived from:
ccsbBroadEn_14266
DNA Barcode:
TCCGCCCATTTTGTACGGACGAGC
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MSANTD2 (79684)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475954
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79684 MSANTD2 Myb/SANT DNA binding domain... NM_001308027.2 99.8% 99.8% 1676_1677delACinsC
2 human 79684 MSANTD2 Myb/SANT DNA binding domain... NM_024631.4 90.5% 90.5% 508_509ins156;1520_1521delACinsC
3 human 79684 MSANTD2 Myb/SANT DNA binding domain... NM_001312920.1 58.7% 58.6% 0_1ins690;986_987delACinsC
4 human 79684 MSANTD2 Myb/SANT DNA binding domain... NM_001312921.2 58.7% 58.6% 0_1ins690;986_987delACinsC
5 human 79684 MSANTD2 Myb/SANT DNA binding domain... NM_001352400.2 58.7% 58.6% 0_1ins690;986_987delACinsC
6 human 79684 MSANTD2 Myb/SANT DNA binding domain... NM_001352401.2 58.7% 58.6% 0_1ins690;986_987delACinsC
7 human 79684 MSANTD2 Myb/SANT DNA binding domain... XM_006718905.2 58.7% 58.6% 0_1ins690;986_987delACinsC
8 human 79684 MSANTD2 Myb/SANT DNA binding domain... XM_006718906.3 58.7% 58.6% 0_1ins690;986_987delACinsC
9 human 79684 MSANTD2 Myb/SANT DNA binding domain... XM_017018296.2 58.7% 58.6% 0_1ins690;986_987delACinsC
10 human 79684 MSANTD2 Myb/SANT DNA binding domain... XM_017018297.1 58.7% 58.6% 0_1ins690;986_987delACinsC
11 human 79684 MSANTD2 Myb/SANT DNA binding domain... XM_017018298.2 58.7% 58.6% 0_1ins690;986_987delACinsC
12 human 79684 MSANTD2 Myb/SANT DNA binding domain... XM_011542982.3 44.1% 42.9% (many diffs)
13 human 79684 MSANTD2 Myb/SANT DNA binding domain... XM_011542981.3 43.2% 42.8% 1_267del;1095_1177del;1227_1228ins799
14 human 79684 MSANTD2 Myb/SANT DNA binding domain... NM_001312919.2 31.3% 30.9% (many diffs)
15 human 79684 MSANTD2 Myb/SANT DNA binding domain... XM_005271674.4 28.3% 26.1% (many diffs)
16 human 79684 MSANTD2 Myb/SANT DNA binding domain... XR_002957196.1 24% (many diffs)
17 mouse 235184 Msantd2 Myb/SANT-like DNA-binding d... NM_146222.2 93.5% 97.1% (many diffs)
18 mouse 235184 Msantd2 Myb/SANT-like DNA-binding d... XM_017313314.1 88.8% 80.7% (many diffs)
19 mouse 235184 Msantd2 Myb/SANT-like DNA-binding d... XM_006510230.3 72.7% 75.8% (many diffs)
20 mouse 235184 Msantd2 Myb/SANT-like DNA-binding d... XM_006510232.3 54% 56.5% (many diffs)
21 mouse 235184 Msantd2 Myb/SANT-like DNA-binding d... XM_006510233.3 54% 56.5% (many diffs)
22 mouse 235184 Msantd2 Myb/SANT-like DNA-binding d... XM_017313315.1 26.9% 25.7% (many diffs)
23 mouse 235184 Msantd2 Myb/SANT-like DNA-binding d... XM_017313316.1 26.9% 25.7% (many diffs)
24 mouse 235184 Msantd2 Myb/SANT-like DNA-binding d... XM_017313317.1 26.9% 25.7% (many diffs)
25 mouse 235184 Msantd2 Myb/SANT-like DNA-binding d... XM_017313318.1 25.8% 25.9% (many diffs)
26 mouse 235184 Msantd2 Myb/SANT-like DNA-binding d... XR_001778867.1 16.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1743
ORF length:
1677
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tgcgccctgt ggctcggagc tgcccgccaa ctcgccgcta aaaattccga
121agatggaggt gctttccccg gcttctcctg gtggcctgag cgacggaaat ccatcgctgt
181ccgacccttc cacgcctcgg ggtgcctccc cgctcgggcc gggcagtgcg gcgggctcgg
241gggcagcggc gtccgggggt ctcgggctgg ggctgggggg ccgcagcgcc gcctcgtcct
301cggtctcctt ctcccctggt ggcggcggtg gcggggctgc ggcagccgcc gccgccgcct
361gccggggcat gtcgtggacg ccagccgaga cgaacgcgct catcgcagtg tggggcaacg
421agcggctggt ggaggcgcgg taccagcagc tggagggagc cggcacggtg ttcggcagca
481aggcccccgg gccagccatg tacgagcgcg tgtcccgggc cctggccgag ctgggctacg
541agcggacccc gtcccagtgc cgggagcgca tcaagaccct tcgcaggtgt tacagtcggg
601tgaaagaaca tggtgttggg aaaagaaaga gcagttacac atttgaacag ttggaacagg
661tgtttggtca gggaggatgg gatgctcagc cctgccagcc tgtacttatt aacagtagtg
721gcttgtacca ggagctggag tcagatggca gcactatgga ggactattca caggaggact
781ggggaaacca cagtcaggat ctccatggct atccaacaga tcaggaattg gatgaaatac
841ctgtcacaaa gagaacatta aaaataaaac aagagtcttc tgaagaagca cagaagagag
901acatcatgca gaatattgta cagattttgg aatcggtaca gttgaaatgg gaactttttc
961agagctggac agacttttca aggctccatc tttctaataa actggccatt tttggaattg
1021gttataacac ccgttggaaa gaggatatcc gttaccatta tgctgagatc agctcccagg
1081tgccccttgg caagcgactt cgggagtact tcaactctga gaagcctgaa ggacggatca
1141ttatgacccg agtgcagaaa atgaactgga aaaatgttta ctacaaattt ttagagatca
1201ctattagcga agctaggtgc ttggagctgc acatggaaat tgactggata cccattgccc
1261actccaaacc aactggtggg aatgttgttc aatatttatt gcctgggggt attcctaaaa
1321gcccaggcct ttatgccatt ggctatgaag aatgtattga gaggcccctc tcaccacaca
1381tggagcaaag ttccctggac ccaggaaaag agggccgggt tgacctggaa accctttcag
1441cacaagcctc attacaggtg gaaatagaac ccacccgaat tatctattgc tacctcggga
1501ttgctgaggt caggactcta cagcagtgct tatttttaca tttccaagcg aataccaaaa
1561ccttcagcaa agattgggtt ggtattaacg ggtttttgtc tcagaactgt attgtggatc
1621ccggagtttc ccccaaatcc atcTACATCA AATTTGTAGA AGTAGAGAGG GATTTTCTTT
1681CCGCAGGCTC TTTAGTTGAG TGCCTGGAAA AAGCCATTGG ATACCCCTTA AAATTTAACA
1741CTGCCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT
1801CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG
1861GCTTTATATA TCTTGTGGAA AGGACGATCC GCCCATTTTG TACGGACGAG CACGCGTTAA
1921GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)