Construct: ORF TRCN0000476082

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008708.1_s317c1
Derived from:
ccsbBroadEn_14474
DNA Barcode:
TCCGCTAAGCCGGGTGGCATAATT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ANKRD13D (338692)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476082
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 338692 ANKRD13D ankyrin repeat domain 13D NM_001347901.2 99.6% 99.4% (many diffs)
2 human 338692 ANKRD13D ankyrin repeat domain 13D XM_011544986.1 91% 90.8% (many diffs)
3 human 338692 ANKRD13D ankyrin repeat domain 13D XM_011544987.2 91% 90.8% (many diffs)
4 human 338692 ANKRD13D ankyrin repeat domain 13D NM_207354.3 85.3% 85.1% (many diffs)
5 human 338692 ANKRD13D ankyrin repeat domain 13D XM_011544985.1 78.9% 78.7% (many diffs)
6 human 338692 ANKRD13D ankyrin repeat domain 13D XR_428913.2 74% (many diffs)
7 human 338692 ANKRD13D ankyrin repeat domain 13D XR_001747857.1 62% (many diffs)
8 human 338692 ANKRD13D ankyrin repeat domain 13D XR_949901.1 55.4% (many diffs)
9 human 338692 ANKRD13D ankyrin repeat domain 13D XR_949902.1 55.2% (many diffs)
10 human 338692 ANKRD13D ankyrin repeat domain 13D XM_011544988.2 52.9% 52.9% (many diffs)
11 mouse 68423 Ankrd13d ankyrin repeat domain 13 fa... NM_026720.2 74.1% 78.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1623
ORF length:
1554
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggtgcagctg gtgctccagt atcgggacta ccagagggcc acgcagaggc
121tggcgggcat tccggaactg ctcaacaaac ttcgccaggc ccccgatttc tacgttgaga
181tgaagtggga gttcaccagc tgggtgcccc ttgtgtctaa gatgtgccca agcgatgtgt
241accgcgtgtg gaagcggggt gagagcctgc gagtagacac cagtctcctg ggcttcgagc
301acatgacctg gcagcggggc cggaggagct tcatcttcaa gggccaggag gcaggagccc
361tggtgatgga agtggaccat gaccggcagg tggtgcatgt ggagacactg gggctcactc
421tgcaggagcc cgaaacactg ctggccgcca tgcggcccag cgaggagcat gtggccagtc
481gcctcacctc tcctatcgtc tccacccacc tggacactcg taatgtggcc tttgagagga
541acaaatgtgg tatctggggc tggcggcctg agaagatgga aactgttagc ggctacgagg
601ccaaggtgta cagtgccacc aacgtggagc tggtgacacg cacacgcacg gagcacctct
661ctgatcagga caagtcgagg agcaaagcgg ggaagactca attccagtcc ttcctgggga
721tggcgcagca gcattcctcc cacaccgggg cccccgtgca gcaggcagcc agccccacca
781accccacagc catctcccct gaggagtact tcgaccccaa cttcagcctg gagtcacgga
841acattggccg ccccatcgag atgtccagca aagtacagag gttcaaggca acactgtggc
901tgagtgaaga gcacccgctc tccctgggtg accaggtgac ccccatcatc gacctaatgg
961ccatcagcaa cgctcacttt gccaagctgc gcgacttcat cactctgcgc cttccacctg
1021gcttccccgt caaaattgag attccccttt tccacgtgct caatgcccgc atcaccttca
1081gcaacctgtg tggctgtgat gagcccctga gctccgtgtg ggtgccggcc cccagctctg
1141ctgtcgccgc atcagggaac cctttcccgt gcgaggtgga ccccaccgtg tttgaagtgc
1201ccaacgggta cagcgtgctg ggcatggagc gcaacgagcc cctccgggac gaggacgatg
1261acctccTGCA GTTCGCCATC CAGCAGAGCC TGCTTGAAGC GGGCACTGAG GCGGAGCAGG
1321TGACCGTCTG GGAAGCCCTG ACCAACACCC GGCCCGGTGC CCGCCCTCAT CCCCAGGCCA
1381CGGTTTATGA GGAACAGCTT CAGCTGGAGC GGGCCCTCCA GGAAAGCCTG CAGCTGTCCA
1441CAGAGCCCAG GGGCCCAGGA TCCCCTCCCA GGACACCACC AGCCCCCGGT CCACCCAGCT
1501TTGAAGAGCA GCTGCGCCTG GCCCTGGAGT TGTCTTCACG GGAGCAGGAG GAGCGGGAGC
1561GGCGCGGGCA GCAGGAGGAG GAGGACTTAC AGCGGATCCT GCAGCTGTCA CTCACTGAGC
1621ACTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1681TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1741GGCTTTATAT ATCTTGTGGA AAGGACGATC CGCTAAGCCG GGTGGCATAA TTACGCGTTA
1801AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)