Construct: ORF TRCN0000476088

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005217.1_s317c1
Derived from:
ccsbBroadEn_11395
DNA Barcode:
GCCCTACCTCTTATGCCTTCTACG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNCAIP (9627)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476088
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9627 SNCAIP synuclein alpha interacting... NM_001308100.2 99.8% 99.7% (many diffs)
2 human 9627 SNCAIP synuclein alpha interacting... XM_011543737.2 99.8% 99.7% (many diffs)
3 human 9627 SNCAIP synuclein alpha interacting... XM_011543738.2 99.8% 99.7% (many diffs)
4 human 9627 SNCAIP synuclein alpha interacting... XM_011543739.1 99.8% 99.7% (many diffs)
5 human 9627 SNCAIP synuclein alpha interacting... XM_011543741.2 99.8% 99.7% (many diffs)
6 human 9627 SNCAIP synuclein alpha interacting... XM_011543743.2 99.8% 99.7% (many diffs)
7 human 9627 SNCAIP synuclein alpha interacting... XM_017010078.1 99.8% 99.7% (many diffs)
8 human 9627 SNCAIP synuclein alpha interacting... XM_017010079.1 97.4% 97% (many diffs)
9 human 9627 SNCAIP synuclein alpha interacting... XM_017010080.1 96% 95.1% (many diffs)
10 human 9627 SNCAIP synuclein alpha interacting... XM_005272138.4 95.2% 95% (many diffs)
11 human 9627 SNCAIP synuclein alpha interacting... XM_005272139.1 95.2% 95% (many diffs)
12 human 9627 SNCAIP synuclein alpha interacting... XM_006714734.2 95.2% 95% (many diffs)
13 human 9627 SNCAIP synuclein alpha interacting... XM_011543745.1 95.2% 95% (many diffs)
14 human 9627 SNCAIP synuclein alpha interacting... XM_024446266.1 95.2% 95% (many diffs)
15 human 9627 SNCAIP synuclein alpha interacting... XM_017010081.1 94.9% 94.6% (many diffs)
16 human 9627 SNCAIP synuclein alpha interacting... NM_005460.4 90.2% 90% (many diffs)
17 human 9627 SNCAIP synuclein alpha interacting... XM_017010082.1 90.2% 90% (many diffs)
18 human 9627 SNCAIP synuclein alpha interacting... XM_024446267.1 90.2% 90% (many diffs)
19 human 9627 SNCAIP synuclein alpha interacting... XM_024446268.1 90.2% 90% (many diffs)
20 human 9627 SNCAIP synuclein alpha interacting... NM_001308105.1 84.3% 84.1% (many diffs)
21 human 9627 SNCAIP synuclein alpha interacting... XR_001742362.1 75.3% (many diffs)
22 human 9627 SNCAIP synuclein alpha interacting... NR_131761.1 74.9% (many diffs)
23 human 9627 SNCAIP synuclein alpha interacting... XR_001742363.1 60.1% (many diffs)
24 human 9627 SNCAIP synuclein alpha interacting... NM_001308108.1 59.6% 57.1% (many diffs)
25 human 9627 SNCAIP synuclein alpha interacting... XM_011543749.2 58.9% 56.1% (many diffs)
26 human 9627 SNCAIP synuclein alpha interacting... XM_017010083.1 58.9% 56.1% (many diffs)
27 human 9627 SNCAIP synuclein alpha interacting... NM_001242935.2 58.4% 56.2% (many diffs)
28 human 9627 SNCAIP synuclein alpha interacting... XM_011543750.1 57.9% 56.8% (many diffs)
29 human 9627 SNCAIP synuclein alpha interacting... XR_001742364.1 57.5% (many diffs)
30 human 9627 SNCAIP synuclein alpha interacting... XM_024446269.1 53.9% 51.2% (many diffs)
31 human 9627 SNCAIP synuclein alpha interacting... XM_017010084.1 53.8% 51.1% (many diffs)
32 human 9627 SNCAIP synuclein alpha interacting... NM_001308107.2 53.4% 51.3% (many diffs)
33 human 9627 SNCAIP synuclein alpha interacting... NM_001308106.1 52.9% 51.8% (many diffs)
34 human 9627 SNCAIP synuclein alpha interacting... XM_017010085.1 52.9% 51.8% (many diffs)
35 human 9627 SNCAIP synuclein alpha interacting... XM_017010086.1 51.7% 51.2% (many diffs)
36 human 9627 SNCAIP synuclein alpha interacting... XR_001742365.2 51.1% (many diffs)
37 human 9627 SNCAIP synuclein alpha interacting... NM_001308109.2 50% 48% (many diffs)
38 human 9627 SNCAIP synuclein alpha interacting... XR_001742366.1 49.4% (many diffs)
39 human 9627 SNCAIP synuclein alpha interacting... NR_131762.1 48.5% (many diffs)
40 mouse 67847 Sncaip synuclein, alpha interactin... NM_001199151.1 80.5% 81% (many diffs)
41 mouse 67847 Sncaip synuclein, alpha interactin... NM_001199153.1 80.5% 81% (many diffs)
42 mouse 67847 Sncaip synuclein, alpha interactin... XM_006526191.3 80.5% 81% (many diffs)
43 mouse 67847 Sncaip synuclein, alpha interactin... XM_006526192.3 80.5% 81% (many diffs)
44 mouse 67847 Sncaip synuclein, alpha interactin... NM_001199154.1 76.6% 77.8% (many diffs)
45 mouse 67847 Sncaip synuclein, alpha interactin... NM_026408.4 76.6% 77.8% (many diffs)
46 mouse 67847 Sncaip synuclein, alpha interactin... XM_017317971.1 75.5% 75.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3117
ORF length:
3048
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggaagcccct gaataccttg atttggatga aattgacttt agtgatgaca
121tatctgacaa taggagtcaa gggaacaggc tacaaaagct tggattggag gacacagaca
181gggaagatgc aatgggcttt ggttcccata gggccaaact gacagtagtt gctgccctgg
241gagcttgcca ttgtcctgag aatgagtatt cagtcacatc actcaagacg atcccagaac
301tgtgccgaag atgtgatacg caaaacgaag acagatcagt ttctagctct agctggaatt
361gtggcatctc aactcttatt acaaacacgc aaaagcccac aggaatcgct gatgtgtaca
421gtaagttccg cccagtgaag cgggtttcgc cactgaaaca tcagccagag actctggaga
481acaatgaaag tgatgaccaa aagaaccaga aagtggttga gtaccagaaa gggggtgagt
541ctgacctggg cccccagcct caggagcttg gccctggaga tggagtgggc ggcccaccag
601gtaagagctc tgagcccagc acatcgctgg gtgaactgga gcactacgac ctcgacatgg
661atgagattct ggatgtgcct tatattaaat ccagtcagca gcttgcctct tttaccaagg
721tgacttcaga aaaaagaatt ttgggcttat gcacaaccat caatggcctt tttggcaaag
781cctgctctac aggaagttct gagagctcat catccaacat ggcaccattt tgtgttcttt
841ctcccgtgaa aagccctcac ttgagaaaag catcagctgt catccacgac cagcacaagc
901tgtccactga agaaaccgag atctcacctc ctctggttaa atgtggctct gcatatgagc
961ctgaaaacca gagtaaagac ttcctaaaca agacatttag tgatcctcat ggtcgaaaag
1021ttgagaagac aacaccagac tgccagctca gggccttcca cctacaatcc tcagcagcag
1081aatccaaacc agaagagcag gtcagtggcc taaaccggac cagctcccaa ggcccagaag
1141aaaggagtga gtatctgaaa aaagtgaaaa gcatcttgaa cattgttaaa gaaggacaga
1201tctctctcct gccacaccta gctgcagaca atctagacaa aattcacgac gaaaatggaa
1261acaatctatt acatattgcg gcgtcacagg gacacgcaga gtgtctacag cacctcactt
1321ctttgatggg agaagactgc ctcaatgagc gcaacactga gaagttgact ccagcaggcc
1381tggccattaa gaatggtcag ttggagtgcg tacgctggat ggtgagcgaa acagaagcca
1441ttgcagaact gagttgttct aaggattttc caagccttat tcattacgca ggttgctatg
1501gccaggaaaa gattcttctg tggcttcttc agtttatgca agagcagggc atctcgttgg
1561atgaagtaga ccaggatggc aacagtgccg ttcacgtagc ctcacagcat ggctaccttg
1621gatgcataca gaccttggtt gaatatggag caaatgtcac catgcagaac cacgctgggg
1681aaaagccctc ccagagcgcc gagcggcagg ggcacaccct gtgctccagg tacctggtgg
1741tggtggagac ctgcatgtcg ctggcctctc aagtggtgaa gttaaccaag cagctaaagg
1801aacaaacagt agaacgtgtc acgctgcaga accaactcca acaatttcta gaagcccaga
1861aatcagaggg caagtcactc ccttcttcac ccagttcacc atcctcacct gcctccagaa
1921agtcccagtg gaaatctcca gatgcagatg atgattctgt agccaaaagc aagccaggag
1981tccaagaggg gattcaggtt cttggaagcc tgtcagcctc cagccgggct agacccaaag
2041caaaagatgg agattctgat aaaatcttac gccagttatt gggaaaggaa atctcagaaa
2101atgtctgcac ccaggaaaaa ctgtccttgg aattccagga tgctcaggct tcctctagaa
2161attctaaaaa gatcccactg gagaagaggg aactgaagtt agccaggctg agacagctga
2221tgcagaggtc actgagtgag tctgacacag actccaacaa ctctgaggac cccaagacta
2281ccccagtgag gaagggtgac cgaccaaggc cgcagcccat tgtagaaagc gtagagagta
2341tggacagcgc agaaagcctg cacctgatga ttaagaaaca caccttggca tcagggggac
2401gcaggtttcc tttcagcatc aaggcctcca aatccctgga tggccacagc ccatctccca
2461cctcagagag cagcgaacca gacttagaat cccagtatcc aggctcaggg agtattcctc
2521caaaccagcc ctctggtgac cctcagcagc ccagccctga cagtactgct gcccagaaag
2581ttgccacaag tcccaagagt gccctcaagt ctccatcttc caagcgtagg acatctcaga
2641acttaaaact gagagttacc tttgaggagc ctgtggtgca gatggagcag cctagccttg
2701aactgaatgg agaaaaagac aaagataagg gcaggactct ccagcggacc tccacaagta
2761acgaatcggg ggatcaactg aaaaggCCTT TTGGAGCCTT TCGATCTATC ATGGAGACAC
2821TAAGTGGCAA CCAAAACAAT AATAATAACT ACCAGGCAGC CAACCAGCTG AAAACCTCTA
2881CATTGCCCTT GACCTCACTT GGGAGGAAGA CAGATGCCAA GGGAAACCCT GCCAGCTCCG
2941CTAGCAAAGG AAAGAATAAG GCAGAAATGT ACAGCAGCTG CATCAATCTT TCCTCTAACA
3001TGCTGATTGA AGAGCATCTG TGTAACGACA CACGGCATAA TGACATCAAT AGAAAAATGA
3061AGAAATCCTA CAGCATAAAG CACATTGCTG AGCCAGAGTC AAAAGAACTC TTCTTGTTGC
3121CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
3181TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
3241ATATATCTTG TGGAAAGGAC GAGCCCTACC TCTTATGCCT TCTACGACGC GTTAAGTCga
3301caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)