Construct: ORF TRCN0000476162

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004482.1_s317c1
Derived from:
ccsbBroadEn_05297
DNA Barcode:
GGTTCCATCTAAAGTGATAGATCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
METAP1D (254042)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476162
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 254042 METAP1D methionyl aminopeptidase ty... NM_199227.3 100% 100%
2 human 254042 METAP1D methionyl aminopeptidase ty... XM_017003750.2 83.5% 84.1% (many diffs)
3 human 254042 METAP1D methionyl aminopeptidase ty... NM_001322278.2 64.7% 64.7% 0_1ins354
4 human 254042 METAP1D methionyl aminopeptidase ty... NM_001322279.2 64.7% 64.7% 0_1ins354
5 human 254042 METAP1D methionyl aminopeptidase ty... NR_136273.2 30% (many diffs)
6 human 254042 METAP1D methionyl aminopeptidase ty... NR_136276.2 28% 1_17del;363_364ins149;874_2900del
7 mouse 66559 Metap1d methionyl aminopeptidase ty... NM_025633.3 90.4% 91% (many diffs)
8 mouse 66559 Metap1d methionyl aminopeptidase ty... XM_017319186.1 75.1% 69.2% (many diffs)
9 mouse 66559 Metap1d methionyl aminopeptidase ty... XM_011239738.2 70.9% 64.8% (many diffs)
10 mouse 66559 Metap1d methionyl aminopeptidase ty... XR_001783162.1 70.7% (many diffs)
11 mouse 66559 Metap1d methionyl aminopeptidase ty... XM_017319188.1 69.2% 64.3% (many diffs)
12 mouse 66559 Metap1d methionyl aminopeptidase ty... XM_017319189.1 69.2% 64.3% (many diffs)
13 mouse 66559 Metap1d methionyl aminopeptidase ty... XR_001783161.1 68.1% (many diffs)
14 mouse 66559 Metap1d methionyl aminopeptidase ty... XM_017319191.1 64.8% 63.3% (many diffs)
15 mouse 66559 Metap1d methionyl aminopeptidase ty... XM_017319190.1 64.6% 62.9% (many diffs)
16 mouse 66559 Metap1d methionyl aminopeptidase ty... XM_017319192.1 63.8% 63.2% (many diffs)
17 mouse 66559 Metap1d methionyl aminopeptidase ty... XM_017319187.1 63.5% 62.2% (many diffs)
18 mouse 66559 Metap1d methionyl aminopeptidase ty... XM_017319193.1 53.3% 44% (many diffs)
19 mouse 66559 Metap1d methionyl aminopeptidase ty... XM_006500008.2 49.4% 45% (many diffs)
20 mouse 66559 Metap1d methionyl aminopeptidase ty... XM_006500009.3 49.4% 45% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1074
ORF length:
1005
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcggcgccc agtggcgtcc acctgctcgt ccgcagaggt tctcatagaa
121ttttctcttc accactcaat catatctact tacacaagca gtcaagcagt caacaaagaa
181gaaatttctt ttttcggaga caaagagata tttcacacag tatagttttg ccggctgcag
241tttcttcagc tcatccggtt cctaagcaca taaagaagcc agactatgtg acgacaggca
301ttgtaccaga ctggggagac agcatagaag ttaagaatga agatcagatt caagggcttc
361atcaggcttg tcagctggcc cgccacgtcc tcctcttggc tgggaagagt ttaaaggttg
421acatgacaac tgaagagata gatgctcttg ttcatcggga aatcatcagt cataatgcct
481atccctcacc tctaggctat ggaggttttc caaaatctgt ttgtacctct gtaaacaacg
541tgctctgtca tggtattcct gacagtcgac ctcttcagga tggagatatt atcaacattg
601atgtcacagt ctattacaat ggctaccatg gagacacctc tgaaacattt ttggtgggca
661atgtggacga atgtggtaaa aagttagtgg aggttgccag gaggtgtaga gatgaagcaa
721ttgcagcttg cagagcaggg gctcccttct ctgtaattGG AAACACAATC AGCCACATAA
781CTCATCAGAA TGGTTTTCAA GTCTGTCCAC ATTTTGTGGG ACATGGAATA GGATCTTACT
841TTCATGGACA TCCAGAAATT TGGCATCATG CAAACGACAG TGATCTACCC ATGGAGGAGG
901GCATGGCATT CACTATAGAG CCAATCATCA CGGAGGGATC CCCTGAATTT AAAGTCCTGG
961AGGATGCATG GACTGTGGTC TCCCTAGACA ATCAAAGGTC GGCGCAGTTC GAGCACACGG
1021TTCTGATCAC GTCGAGGGGC GCGCAGATCC TGACCAAACT ACCCCATGAG GCCTTGCCAA
1081CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1141ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1201TATCTTGTGG AAAGGACGAG GTTCCATCTA AAGTGATAGA TCCACGCGTT AAGTCgacaa
1261tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)