Construct: ORF TRCN0000476280

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015532.1_s317c1
Derived from:
ccsbBroadEn_10069
DNA Barcode:
GCTCAAACTTGTACCCCAGTTATA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CERKL (375298)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476280
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 375298 CERKL ceramide kinase like NM_201548.5 99.9% 100% 1506C>T
2 human 375298 CERKL ceramide kinase like NM_001030311.2 95.2% 95.3% 677_754del;1584C>T
3 human 375298 CERKL ceramide kinase like NM_001160277.1 87.3% 87.2% 481_482ins132;545_622del;1452C>T
4 human 375298 CERKL ceramide kinase like NM_001030313.2 86.9% 86.8% 613_614ins207;1299C>T
5 human 375298 CERKL ceramide kinase like NM_001030312.2 78.6% 78.7% 477_478ins339;1167C>T
6 human 375298 CERKL ceramide kinase like NR_027690.1 47.4% (many diffs)
7 human 375298 CERKL ceramide kinase like NR_027689.1 43.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1665
ORF length:
1596
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gccctggagg aggcgcagga accgggtgag tgccctggag ggcggccggg
121aggaagaggc gcccccggag gctgccgctg tgcctccggc gctgttaacg tccccgcagc
181agacggaggc ggcggccgag cggattctgc tccggggcat cttcgagatc gggagggaca
241gttgtgacgt ggtgctgagc gagcgagcac tgcggtggcg gcccattcag cccgagcgcc
301cggcgggtga ttctaagtat gacttgctat gtaaagaaga atttattgaa ctcaaagaca
361tattctctgt gaaactgaaa cggcgttgtt ctgttaaaca gcagagaagt ggtactttat
421taggtatcac actcttcatc tgcttgaaaa aggaacaaaa taaactaaag aattctacac
481ttgatcttat taatttaagt gaagaccact gtgacatatg gtttagacag ttcaagaaaa
541tattggcagg ctttccaaac agaccgaagt cattaaaaat actccttaac ccccaaagtc
601acaaaaaaga agctacccag gtttattatg agaaggttga acctctgttg aagcttgcag
661gaataaaaac tgatgtaaca ataatggaat atgaagggca cgctctgtca ctgcttaagg
721aatgtgaact ccagggattt gatggtgttg tctgtgttgg tggagatgga tctgctagcg
781aagtagccca tgctttgctt ctgagagctc agaagaatgc tgggatggaa acagaccgaa
841tcctgactcc tgtcagagca cagcttccac ttggcttaat accagcagga tctaccaatg
901tattggcaca ttctcttcat ggagttcctc atgtgataac tgcaacattg cacattataa
961tggggcatgt acagctggtc gacgtctgca ccttcagcac cgctggcaag cttcttcgct
1021ttgggttctc agccatgttt ggctttggtg gaagaacttt ggctctggca gaaaaatatc
1081gatggatgtc ccctaaccaa cggagagatt ttgctgttgt taaggcactg gcaaaactta
1141aggcagaaga ctgtgaaata tcatttttac catttaacag ctctgatgat gtgcaagaaa
1201ggagggcaca gggatctccc aaatctgact gtaatgatca atggcaaatg atccagggtc
1261agttcttgaa tgtcagcatt atggcaattc cttgcctgtg ttcagtggca cctagaggct
1321tggcacctaa taccagatta aataatggaa gtatggctct tataattgcc cgaaacactt
1381cTCGGCCAGA ATTTATAAAA CACCTGAAAA GATATGCCAG TGTAAAAAAT CAGTTCAATT
1441TTCCATTTGT TGAGACTTAC ACTGTTGAGG AAGTAAAAGT TCATCCAAGG AATAATACTG
1501GTGGATATAA TCCAGAGGAG GAGGAGGATG AAACTGCTTC AGAAAATTGT TTCCCTTGGA
1561ATGTAGATGG TGATTTAATG GAAGTTGCAT CAGAGGTCCA TATTAGATTG CATCCAAGAC
1621TTATCAGTCT TTATGGAGGA AGCATGGAAG AAATGATTCC AAAGTTGCCA ACTTTCTTGT
1681ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1741AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1801GAAAGGACGA GCTCAAACTT GTACCCCAGT TATAACGCGT TAAGTCgaca atcaacctct
1861ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)