Construct: ORF TRCN0000476300

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007957.1_s317c1
Derived from:
ccsbBroadEn_06744
DNA Barcode:
GATTGACAGTGTAAACATATTTCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EXOSC9 (5393)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476300
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5393 EXOSC9 exosome component 9 NM_005033.3 99.9% 99.7% 607A>G
2 human 5393 EXOSC9 exosome component 9 NM_001034194.2 96.1% 96% 607A>G;1155_1205del
3 human 5393 EXOSC9 exosome component 9 XM_011532035.3 88.7% 88.1% (many diffs)
4 human 5393 EXOSC9 exosome component 9 XR_001741241.2 79.1% (many diffs)
5 mouse 50911 Exosc9 exosome component 9 NM_019393.2 87.9% 91.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1386
ORF length:
1317
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaaggaaacg ccactctcaa actgcgaacg ccgcttccta ctccgtgcca
121tcgaagagaa gaagcggctg gatggcagac aaacctatga ttataggaac atcaggatct
181catttggaac agattacgga tgctgcattg tggaacttgg aaaaacaaga gttcttggac
241aggtttcctg tgaacttgtg tctccaaaac tcaatcgggc aacagaaggt attctttttt
301ttaaccttga actctctcag atggccgctc cagctttcga acctggcagg cagtcagatc
361tcttggtgaa gttgaatcga ctcatggaaa gatgtctaag aaattcgaag tgtatagaca
421ctgagtctct ctgtgttgtt gctggtgaaa aggtttggca aatacgtgta gacctacatt
481tattaaatca tgatggaaat attattgatg ctgccagcat tgctgcaatc gtggccttat
541gtcatttccg aagacctgat gtctctgtcc aaggagatga agtaacactg tatacacctg
601aagagcgtga tcctgtacca ttaagtatcc accacatgcc catttgtgtc agttttgcct
661ttttccagca aggagcatat ttattggtgg atcccaatga acgagaagaa cgtgtgatgg
721atggcttgct ggtgattgcc atgaacaaac atcgagagat ttgtactatc cagtccagtg
781gtgggataat gctactaaaa gatcaagttc tgagatgcag taaaatcgct ggtgtgaaag
841tagcagaaat tacagagcta atattgaaag ctttggagaa tgaccaaaaa gtaaggaaag
901aaggtggaaa gtttggtttt gcagagtcta tagcaaatca aaggatcaca gcatttaaaa
961tggaaaaggc ccctattgat acctcggatg tagaagaaaa agcagaagaa atcattgctg
1021aagcagaacc TCCTTCAGAA GTTGTTTCTA CACCTGTGCT ATGGACTCCT GGAACTGCCC
1081AAATTGGAGA GGGAGTAGAA AACTCCTGGG GTGATCTTGA AGACTCTGAG AAGGAAGATG
1141ATGAAGGCGG TGGTGATCAA GCTATCATTC TTGATGGTAT AAAAATGGAC ACTGGAGTAG
1201AAGTCTCTGA TATTGGAAGC CAAGATGCTC CCATAATACT CTCAGATAGT GAAGAAGAAG
1261AAATGATCAT TTTGGAACCA GACAAGAATC CAAAGAAAAT AAGAACACAG ACCACCAGTG
1321CAAAACAAGA AAAAGCACCA AGTAAAAAGC CAGTGAAAAG AAGAAAAAAG AAGAGAGCTG
1381CCAATTTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1441TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1501CTTGGCTTTA TATATCTTGT GGAAAGGACG AGATTGACAG TGTAAACATA TTTCCACGCG
1561TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)

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