Construct: ORF TRCN0000476415

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007208.1_s317c1
Derived from:
ccsbBroadEn_01346
DNA Barcode:
AACAATTCCGACCGCCCCAGAATA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTPRR (5801)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476415
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5801 PTPRR protein tyrosine phosphatas... NM_130846.3 99.9% 99.7% 206A>G
2 human 5801 PTPRR protein tyrosine phosphatas... NM_001207016.1 91.2% 91.1% 1_117del;323A>G
3 human 5801 PTPRR protein tyrosine phosphatas... NM_001207015.2 75.5% 75.4% 1_399del;605A>G
4 human 5801 PTPRR protein tyrosine phosphatas... XM_011538615.2 63.4% 63.3% 1_711del;917A>G
5 human 5801 PTPRR protein tyrosine phosphatas... NM_002849.4 62.6% 62.5% 1_735del;941A>G
6 human 5801 PTPRR protein tyrosine phosphatas... XR_001748831.2 41.4% (many diffs)
7 human 5801 PTPRR protein tyrosine phosphatas... XR_001748830.1 35.1% (many diffs)
8 mouse 19279 Ptprr protein tyrosine phosphatas... NM_001161838.1 87.5% 92.4% (many diffs)
9 mouse 19279 Ptprr protein tyrosine phosphatas... NM_001161839.1 87.5% 92.4% (many diffs)
10 mouse 19279 Ptprr protein tyrosine phosphatas... NM_001161840.1 87.5% 92.4% (many diffs)
11 mouse 19279 Ptprr protein tyrosine phosphatas... XM_006513383.3 67.4% 71.2% (many diffs)
12 mouse 19279 Ptprr protein tyrosine phosphatas... NM_001161837.1 65.7% 69.3% (many diffs)
13 mouse 19279 Ptprr protein tyrosine phosphatas... XM_006513382.1 58.2% 61.3% (many diffs)
14 mouse 19279 Ptprr protein tyrosine phosphatas... NM_011217.2 55% 58% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1305
ORF length:
1236
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gattctttac agattaaaag aaagatttca gctttcctta agacaagaca
121aagagaaaaa ccaggagatc cacctatcgc ccatcacatt acagccagca ctgtccgagg
181caaagacagt ccacagcatg gtccaacctg agcaggcccc aaaggtactg aatgttgtcg
241tggaccctca aggccgaggt gctcctgaga tcagagctac caccgctacc tctgtttgcc
301cttctccttt caaaatgaag cccataggac ttcaagagag aagagggtcc aacgtatctc
361ttacattgga catgagtagc ttggggaaca ttgaaccctt tgtgtctata ccaacaccac
421gggagaaggt agcaatggag tatctgcagt cagccagccg aattctcaca aggtctcagc
481tgagggacgt cgtggcaagt tcacatttac tccaaagtga attcatggaa ataccaatga
541actttgtgga tcccaaagaa attgatattc cgcgtcatgg aactaaaaat cgctataaga
601ccattttacc aaatcccctc agcagagtgt gtttaagacc aaaaaatgta accgattcat
661tgagcaccta cattaatgct aattatatta ggggctacag tggcaaggag aaagccttca
721ttgccacgca gggccccatg atcaacaccg tggatgattt ctggcagatg gtttggcagg
781aagacagccc tgtgattgtt atgatcacaa aactcaaaga aaaaaatgag aaatgtgtgc
841tatactggcc ggaaaagaga gggatatatg gaaaagttga ggttctggtt atcagtgtaa
901atgaatgtga taactacacc attcgaaacc ttgtcttaaa gcaaggaagc cacacccaac
961atgtgaagca ttactggtac acctcatggc ctgatcacaa gactccagac agtgcccagc
1021ccctccTACA GCTCATGCTG GATGTAGAAG AAGACAGACT TGCTTCCCAG GGCCGAGGGC
1081CTGTGGTTGT CCACTGCAGT GCAGGAATAG GTAGAACAGG GTGTTTTATT GCTACATCCA
1141TTGGCTGTCA ACAGCTGAAA GAAGAAGGAG TTGTGGATGC ACTAAGCATT GTCTGCCAGC
1201TTCGTATGGA TAGAGGTGGA ATGGTGCAAA CCAGTGAGCA GTATGAATTT GTGCACCATG
1261CTCTGTGCCT GTATGAGAGC AGACTTTCAG CAGAGACTGT CCAGTTGCCA ACTTTCTTGT
1321ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1381AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTT
1441GGAAAGGACG AAACAATTCC GACCGCCCCA GAATAACGCG TTAAGTCgac aatcaacctc
1501tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)