Construct: ORF TRCN0000476589

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003576.1_s317c1
Derived from:
ccsbBroadEn_08467
DNA Barcode:
ATCGAACACGTTAAGGCTATAGCC
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC38A4 (55089)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476589
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55089 SLC38A4 solute carrier family 38 me... NM_001143824.2 99.9% 100% 201T>C
2 human 55089 SLC38A4 solute carrier family 38 me... NM_018018.5 99.9% 100% 201T>C
3 human 55089 SLC38A4 solute carrier family 38 me... XM_005268997.2 99.9% 100% 201T>C
4 mouse 69354 Slc38a4 solute carrier family 38, m... NM_027052.3 82.6% 87% (many diffs)
5 mouse 69354 Slc38a4 solute carrier family 38, m... XM_006521346.3 82.6% 87% (many diffs)
6 mouse 69354 Slc38a4 solute carrier family 38, m... XM_006521348.3 82.6% 87% (many diffs)
7 mouse 69354 Slc38a4 solute carrier family 38, m... XM_006521349.3 82.6% 87% (many diffs)
8 mouse 69354 Slc38a4 solute carrier family 38, m... XM_006521350.3 82.6% 87% (many diffs)
9 mouse 69354 Slc38a4 solute carrier family 38, m... XM_006521351.2 82.6% 87% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1707
ORF length:
1641
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga tcccatggaa ctgagaaatg tcaacatcga accagatgat gagagcagca
121gtggagaaag tgctccagat agctacatcg ggataggaaa ttcagaaaag gcagcaatga
181gcagtcaatt tgctaatgaa gacactgaaa gtcagaaatt cctgacaaat ggatttttgg
241ggaaaaagaa gctggcagat tatgccgatg aacaccatcc cggaaccact tcctttggaa
301tgtcttcatt taacctgagt aatgccatca tgggcagtgg gatcctgggc ttgtcctatg
361ccatggccaa cacagggatc atacttttta taatcatgct gcttgctgtg gcaatattat
421cactgtattc agttcacctt ttattaaaaa cagccaagga aggagggtct ttgatttatg
481aaaaattagg agaaaaggca tttggatggc cgggaaaaat tggagctttt gtttccatta
541caatgcagaa cattggagca atgtcaagct acctctttat cattaaatat gaactacctg
601aagtaatcag agcattcatg ggacttgaag aaaatactgg agaatggtac ctcaatggca
661actacctcat catatttgtg tctgttggaa ttattcttcc actttcgctc cttaaaaatt
721taggttatct tggctatacc agtggatttt ctcttacctg catggtgttt tttgttagtg
781tggtgattta caagaaattc caaataccct gccctctacc tgttttggat cacagtgttg
841gaaatctgtc attcaacaac acgcttccaa tgcatgtggt aatgttaccc aacaactctg
901agagttctga tgtgaacttc atgatggatt acacccaccg caatcctgca gggctggatg
961agaaccaggc caagggctct cttcatgaca gtggagtaga atatgaagct catagtgatg
1021acaagtgtga acccaaatac tttgtattca actcccggac ggcctatgca attcctatcc
1081tagtatttgc ttttgtatgc caccctgagg tccttcccat ctacagtgaa cttaaagatc
1141ggtcccggag aaaaatgcaa acggtgtcaa atatttccat cacggggatg cttgtcatgt
1201acctgcttgc cgccctcttt ggttacctaa ccttctatgg agaagttgaa gatgaattac
1261ttcatgccta cagcaaagtg tatacattag acatcccTCT TCTCATGGTT CGCCTGGCAG
1321TCCTTGTGGC AGTAACACTA ACTGTGCCCA TTGTCCTCTT CCCAATTCGT ACATCAGTGA
1381TCACACTGTT ATTTCCCAAA CGACCCTTCA GCTGGATACG ACATTTCCTG ATTGCAGCTG
1441TGCTTATTGC ACTTAATAAT GTTCTGGTCA TCCTTGTGCC AACTATAAAA TACATCTTCG
1501GATTCATAGG GGCTTCTTCT GCCACTATGC TGATTTTTAT TCTTCCAGCA GTTTTTTATC
1561TTAAACTTGT CAAGAAAGAA ACTTTTAGGT CACCCCAAAA GGTCGGGGCT TTAATTTTCC
1621TTGTGGTTGG AATATTCTTC ATGATTGGAA GCATGGCACT CATTATAATT GACTGGATTT
1681ATGATCCTCC AAATTCCAAG CATCACTCCC AACTTTCTTG TACAAAGTGG TTGATATCGG
1741TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA
1801ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG AATCGAACAC
1861GTTAAGGCTA TAGCCACGCG TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa
1921agatt

Download FASTA (ORF) (Full)