Construct: ORF TRCN0000476859

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001404.1_s317c1
Derived from:
ccsbBroadEn_12646
DNA Barcode:
AGTTTCTCGCGGTACGTTTCCTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CNTNAP3 (79937)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476859
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79937 CNTNAP3 contactin associated protei... NM_033655.3 93.5% 93.5% (many diffs)
2 human 728577 CNTNAP3B contactin associated protei... NM_001201380.2 92.4% 92% (many diffs)
3 human 643827 CNTNAP3P2 CNTNAP3 pseudogene 2 NR_111893.2 46.7% (many diffs)
4 human 100289279 CNTNAP3C contactin associated protei... XM_017015380.1 41.6% 41.2% (many diffs)
5 human 100289279 CNTNAP3C contactin associated protei... XM_011545672.3 40.8% 40.7% (many diffs)
6 human 100289279 CNTNAP3C contactin associated protei... XM_011545673.2 30.7% 29.6% (many diffs)
7 human 100289279 CNTNAP3C contactin associated protei... XM_011545674.2 29.6% 29.5% 1072_1076delGTGCT;1080_1080delTins2547
8 human 100289279 CNTNAP3C contactin associated protei... XR_950635.1 28.5% 1_376del;1301_1302insAGATC;1516_1517ins2476
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3690
ORF length:
3621
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcttcagtg gcctgggccg tcctcaaggt gctgctgctt ctccccactc
121agacttggag ccccgtggga gcaggaaatc cacctgactg tgatgcccca ctggcctctg
181ccttgcctag gtcatccttc agcagctcct cagagctgtc cagcagccac ggcccggggt
241tttcaaggct taatcgaaga gatggagctg gtggctggac tccacttgtg tcaaataaat
301accaatggct gcaaattgac cttggagaga gaatggaggt cactgctgtc gccacccaag
361gaggatatgg gagctctgac tgggtgacca gctacctcct gatgttcagt gatggtggga
421gaaactggaa gcagtatcgc cgagaagaaa gcatctgggg ttttccagga aacacaaacg
481cagacagtgt ggtgcactac agactccagc ctccctttga agccaggttc ctgcgctttc
541tccctttagc ctggaaccct aggggcagga ttgggatgcg gatcgaagtg tacggatgtg
601catataaatc tgaggtggtt tattttgatg gacaaagtgc tctgctgtat agacttgata
661aaaaaccttt aaaaccaata agagacgtta tttctttgaa atttaaagcc atgcagagca
721atggaattct acttcacaga gaaggacaac atggaaatca cattactctg gaattaatta
781aaggaaagct tgtctttttt cttaattcag gcaatgctaa gctgccttcc actattgctc
841ctgtgaccct caccctgggc agcctgctgg acgaccagca ctggcattcc gtcctcatcg
901agctcctcga cacgcaggtc aacttcaccg tggacaaaca cactcatcat ttccaagcaa
961agggagattc cagttacttg gatcttaatt ttgagatcag ctttggggga attccgacac
1021ccggaagatc gcgggcattc agacgtaaaa gctttcatgg gtgtttagaa aatctttatt
1081ataatggagt ggatgttacc gaattagcca agaaacacaa accacagatc ctcatgatgg
1141gaaatgtgtc cttctcatgt ccacagccac agactgtccc tgtgactttt ctgagctcca
1201ggagttatct ggctctgcca ggcaactctg gggaggacaa agtgtctgtc acttttcaat
1261ttcgaacgtg gaacagagca ggacatttgc ttttcggcga acttcgacgt ggttcaggga
1321gtttcgtcct ctttcttaag gatggcaagc tcaaactgag tctcttccag ccgggacagt
1381caccaaggaa tgtcacagca ggtgctggat taaacgatgg gcagtggcac tctgtgtcct
1441tctctgccaa gtggagccat atgaatgtgg tggtggacga tgacacagct gttcagcccc
1501tggtggctgt gctcattgat tcaggtgaca cctattattt tggaggctgc ctggacaaca
1561gctctggctc tggatgtaaa agccccctgg gagggtttca gggctgccta aggctcatca
1621ccattggtga caaagcggtg gatcccatct tagtacagca gggggcgctg gggagtttca
1681gggacctcca gatagactcc tgcggcatca cagacaggtg cttgcccagc tactgtgagc
1741atgggggcga gtgttcccag tcgtgggaca ccttctcctg tgactgtcta ggcacaggct
1801atacgggcga gacctgccat tcctctctct acgagcagtc ttgtgaagcc cacaagcacc
1861gagggaaccc gtctgggctt tactatattg atgcagatgg aagtggcccc ctgggaccat
1921ttcttgtgta ctgcaatatg acagacgccg cgtggacggt ggtgcagcac ggtggccccg
1981acgcggtgac cctccgaggt gcccccagcg ggcacccgcg ctcggctgtg tccttcgcgt
2041acgcagcggg cgcggggcag ctgcggtccg cggtgaacct ggcggagcgc tgcgagcaga
2101ggctggctct gcgctgcggg acggcgcggc gcccggactc acgagatgga accccactga
2161gctggtgggt tggaagaacc aatgaaacac acacctactg gggaggttct ctgcctgatg
2221ctcaaaagtg tacttgtgga ttagagggga actgcattga ttctcagtat tactgcaact
2281gtgatgctgg ccgaaatgaa tggactagtg acacaatagt cctttcccaa aaggagcacc
2341tgccagtcac tcagattgtg atgacagacg caggccgacc acattccgaa gcagcttata
2401cactggggcc actgctctgc cgcggagatc agtcattctg gaattcagct tccttcaaca
2461ctgagacttc ataccttcat ttccctgctt tccacggaga actcactgct gacgtgtgct
2521tcttttttaa gaccacagtt tcctccgggg tgtttatgga gaacctgggg atcacagatt
2581tcatcaggat tgagctgcgt gctcccacag aagtgacctt ttccttcgat gtggggaatg
2641gaccttgtga ggtcacggtg cagtcaccca ctccctttaa tgacaatcag tggcaccacg
2701tgagggcaga gagaaatgtt aaaggagcgt ctcttcaagt tgatcagctt cctcagaaga
2761tgcagcctgc ccctgctgat gggcacgttc gtttacagct caacagccag ctcttcattg
2821agatttccgc atattttgca actggctcct caatgacata ccattttcaa gaacattaca
2881ctttaagtga aaactccagc tctctcgttt cttcattaca cagagatgta acattgacca
2941gagaaatgat cacactgagc ttccgaacca cacgaactcc gagcttattg ctgtatgtga
3001gctctttcta tgaggaatac ctttcagtta tcctcgccaa caatggaagt ttgcagatta
3061ggtacaagct agatagacat caaaatcctg atgcatttac ctttgatttt aaaaacatgg
3121ctgatgggca acttcaccaa gtgaagatta acagagaaga agctgtggtc atggtagagg
3181ttaaccagag cgcaaagaaa caagtcatct tgtcctcagg gacagaattc aacgctgtca
3241aaTCTCTCAT ATTGGGAAAG GTTTTAGAGG CTGCCGGCGC GGACCCGGAC ACAAGGCGGG
3301CGGCGACTAG TGGCTTCACC GGCTGCCTCT CGGCGGTGCG CTTCGGCCGC GCTGCTCCCC
3361TGAAGGCGGC GCTGCGCCCC AGCGGCCCCT CCCGGGTCAC CGTCCGCGGC CACGTGGCCC
3421CTATGGCCCG CTGCGCAGCG GGGGCGGCGT CCGGCTCCCC GGCGCGGGAA CTGGCTCCCC
3481GACTCGCGGG GGGCGCAGGT CGTTCTGGAC CAGCGGATGA GGGAGAGCCC TTGGTTAATG
3541CAGACAGAAG AGACTCTGCT GTCATCGGAG GTGTGATAGC AGTGGTGATA TTTATTTTGC
3601TTTGCATCAC TGCCATAGCC ATACGCATCT ATCAACAGAG AAAGTTACGC AAAGAAAATG
3661AGTCAAAAGT CTCAAAAAAA GAAGAGTGCT TGCCAACTTT CTTGTACAAA GTGGTTGATA
3721TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
3781CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAAGTTT
3841CTCGCGGTAC GTTTCCTTCA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
3901tgaaagatt

Download FASTA (ORF) (Full)