Construct: ORF TRCN0000477045

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004672.1_s317c1
Derived from:
ccsbBroadEn_09618
DNA Barcode:
CCACTATGAATACCCCTTGTGGTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC38A6 (145389)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477045
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 145389 SLC38A6 solute carrier family 38 me... NM_153811.2 99.8% 99.7% 208T>A;684T>C
2 human 145389 SLC38A6 solute carrier family 38 me... XM_017021023.1 94.5% 94% (many diffs)
3 human 145389 SLC38A6 solute carrier family 38 me... XM_017021020.1 94.1% 90.3% (many diffs)
4 human 145389 SLC38A6 solute carrier family 38 me... XM_017021021.1 90.2% 86.5% (many diffs)
5 human 145389 SLC38A6 solute carrier family 38 me... XM_017021022.1 88.1% 83.2% (many diffs)
6 human 145389 SLC38A6 solute carrier family 38 me... XR_001750163.1 86.7% (many diffs)
7 human 145389 SLC38A6 solute carrier family 38 me... XM_017021024.1 85.6% 81.9% (many diffs)
8 human 145389 SLC38A6 solute carrier family 38 me... NM_001172702.1 83.9% 83.1% (many diffs)
9 human 145389 SLC38A6 solute carrier family 38 me... XM_017021025.1 82.5% 79% (many diffs)
10 human 145389 SLC38A6 solute carrier family 38 me... XM_017021026.1 82.5% 79% (many diffs)
11 human 145389 SLC38A6 solute carrier family 38 me... XR_002957534.1 74.4% (many diffs)
12 human 145389 SLC38A6 solute carrier family 38 me... XM_011536469.2 71.6% 67.6% (many diffs)
13 human 145389 SLC38A6 solute carrier family 38 me... XM_024449490.1 70.3% 70.3% 0_1ins405;279T>C
14 human 145389 SLC38A6 solute carrier family 38 me... XM_024449491.1 70.3% 70.3% 0_1ins405;279T>C
15 human 145389 SLC38A6 solute carrier family 38 me... XM_024449492.1 70.3% 70.3% 0_1ins405;279T>C
16 human 145389 SLC38A6 solute carrier family 38 me... NR_033344.2 68% (many diffs)
17 human 145389 SLC38A6 solute carrier family 38 me... XM_024449486.1 65.4% 62.2% (many diffs)
18 human 145389 SLC38A6 solute carrier family 38 me... XM_024449487.1 65.4% 62.2% (many diffs)
19 human 145389 SLC38A6 solute carrier family 38 me... XM_024449488.1 65.4% 62.2% (many diffs)
20 human 145389 SLC38A6 solute carrier family 38 me... XM_024449489.1 65.4% 62.2% (many diffs)
21 human 145389 SLC38A6 solute carrier family 38 me... XR_001750164.1 64.3% (many diffs)
22 human 145389 SLC38A6 solute carrier family 38 me... XM_024449493.1 61.5% 58.4% (many diffs)
23 human 145389 SLC38A6 solute carrier family 38 me... XM_006720050.2 55.8% 55.9% 0_1ins603;81T>C
24 human 145389 SLC38A6 solute carrier family 38 me... XM_024449497.1 55.8% 55.9% 0_1ins603;81T>C
25 human 145389 SLC38A6 solute carrier family 38 me... XM_024449494.1 51.3% 48.4% (many diffs)
26 human 145389 SLC38A6 solute carrier family 38 me... XM_024449495.1 51.3% 48.4% (many diffs)
27 human 145389 SLC38A6 solute carrier family 38 me... XM_024449496.1 51.3% 48.4% (many diffs)
28 mouse 625098 Slc38a6 solute carrier family 38, m... XM_011244154.2 80.5% 79.6% (many diffs)
29 mouse 625098 Slc38a6 solute carrier family 38, m... XM_006516118.2 74.5% 75.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1437
ORF length:
1368
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggaggcgtcc tgggggagct tcaacgctga gcggggctgg tatgtctctg
121tccagcagcc tgaagaagcg gaggccgaag agttgagtcc gttgctaagc aacgaacttc
181acagacagcg atccccaggt gtttcatttg gtttatcagt gtttaatttg atgaatgcca
241tcatgggaag tggcatcctt ggcttagctt atgttatggc taataccggt gtctttggat
301ttagcttctt gctgctgaca gttgctctcc tggcttctta ctcagtccat cttctgctta
361gtatgtgtat tcagacagct gtaacatctt atgaagatct tggactcttt gcatttggat
421tacctggaaa gttggtggtg gcaggcacca taataattca gaatattgga gctatgtcat
481cttatctttt aattattaaa acagagcttc ctgctgctat tgcagaattt ttgactggag
541actatagtag atattggtat cttgatggac aaacactact aataatcata tgtgttggca
601ttgtgttccc tcttgcactt cttcccaaaa taggctttct tggctacaca agtagtttat
661catttttctt tatgatgttc tttgctcttg tggtaataat taaaaaatgg tccatccctt
721gtcctctgac attaaattat gtagagaaag gcttccagat ttcaaatgtt acagatgatt
781gtaagccaaa gctctttcat ttctccaaag agagtgctta tgccttacca accatggctt
841tttcatttct ctgccatacc tcaatattgc ccatatactg tgaacttcaa agtccttcaa
901agaaaagaat gcagaatgtt accaatacag caattgcttt aagttttctc atttatttta
961tatctgcact ctttgggtac ctcacttttt atgacaaagt ggagtcagaa ttactaaaag
1021gttatagtaa atacttatca catgatgttG TTGTCATGAC TGTGAAGTTA TGCATACTAT
1081TTGCTGTGCT TTTGACAGTC CCTCTAATCC ACTTCCCTGC CAGAAAAGCT GTAACAATGA
1141TGTTTTTCTC CAATTTTCCA TTCTCATGGA TTCGCCATTT TTTGATCACT CTAGCACTCA
1201ATATTATCAT CGTTTTACTT GCAATATATG TTCCTGACAT TAGAAATGTA TTTGGTGTAG
1261TTGGTGCCAG TACATCAACA TGTTTGATTT TTATATTCCC AGGACTATTT TATCTTAAAC
1321TTAGCAGAGA GGATTTTCTG TCATGGAAAA AGCTTGGGGC ATTCGTTTTG CTCATCTTTG
1381GAATTTTGGT TGGGAATTTT AGTTTAGCAC TCATCATTTT TGATTGGATT AATAAATTGC
1441CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1501TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1561ATATATCTTG TGGAAAGGAC GACCACTATG AATACCCCTT GTGGTAACGC GTTAAGTCga
1621caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)