Construct: ORF TRCN0000477047

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014357.1_s317c1
Derived from:
ccsbBroadEn_05659
DNA Barcode:
TTTTCGCTTCACATCCCCTAGCAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TAFA1 (407738)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477047
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 407738 TAFA1 TAFA chemokine like family ... NM_001252216.1 100% 100%
2 human 407738 TAFA1 TAFA chemokine like family ... NM_213609.4 100% 100%
3 human 407738 TAFA1 TAFA chemokine like family ... XM_017006386.1 100% 100%
4 human 407738 TAFA1 TAFA chemokine like family ... XM_017006387.2 100% 100%
5 human 407738 TAFA1 TAFA chemokine like family ... XM_017006388.1 99.2% 99.2% 116_117insAGA
6 human 407738 TAFA1 TAFA chemokine like family ... XM_017006389.1 99.2% 99.2% 116_117insAGA
7 human 407738 TAFA1 TAFA chemokine like family ... XM_017006390.1 99.2% 99.2% 116_117insAGA
8 mouse 320265 Fam19a1 family with sequence simila... NM_182808.3 90.9% 99.2% (many diffs)
9 mouse 320265 Fam19a1 family with sequence simila... XM_017321638.1 77% 84% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
465
ORF length:
399
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc aatggtctct gcgatgtcct gggTCCTGTA TTTGTGGATA AGTGCTTGTG
121CAATGCTACT CTGCCATGGA TCCCTTCAGC ACACTTTCCA GCAGCATCAC CTGCACAGAC
181CAGAAGGAGG GACGTGTGAA GTGATAGCAG CACACCGATG TTGTAACAAG AATCGCATTG
241AGGAGCGGTC ACAAACAGTA AAGTGTTCCT GTCTACCTGG AAAAGTGGCT GGAACAACAA
301GAAACCGGCC TTCTTGCGTC GATGCCTCCA TAGTGATTGG GAAATGGTGG TGTGAGATGG
361AGCCTTGCCT AGAAGGAGAA GAATGTAAGA CACTCCCTGA CAATTCTGGA TGGATGTGCG
421CAACAGGCAA CAAAATTAAG ACCACGAGAA TTCACCCAAG AACCTACCCA ACTTTCTTGT
481ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
541AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
601GAAAGGACGA TTTTCGCTTC ACATCCCCTA GCAGACGCGT TAAGTCgaca atcaacctct
661ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)