Construct: ORF TRCN0000477173

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008198.1_s317c1
Derived from:
ccsbBroadEn_08713
DNA Barcode:
GCAAGACGTCATATGTCCCCACTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PELI2 (57161)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477173
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57161 PELI2 pellino E3 ubiquitin protei... NM_021255.3 100% 100%
2 human 57161 PELI2 pellino E3 ubiquitin protei... XM_017021478.1 96.2% 94.7% (many diffs)
3 human 57161 PELI2 pellino E3 ubiquitin protei... XM_006720211.3 76.1% 76.1% 0_1ins300
4 human 57161 PELI2 pellino E3 ubiquitin protei... XM_011536990.2 76.1% 76.1% 0_1ins300
5 human 57161 PELI2 pellino E3 ubiquitin protei... XM_011536992.3 76.1% 76.1% 0_1ins300
6 human 57161 PELI2 pellino E3 ubiquitin protei... XM_017021479.1 76.1% 76.1% 0_1ins300
7 human 57161 PELI2 pellino E3 ubiquitin protei... XM_005267890.5 57.4% 56.1% (many diffs)
8 mouse 93834 Peli2 pellino 2 NM_033602.2 86.9% 95.2% (many diffs)
9 mouse 93834 Peli2 pellino 2 XM_006519740.3 74.5% 82.3% (many diffs)
10 mouse 93834 Peli2 pellino 2 XM_006519741.2 66.9% 74.2% (many diffs)
11 mouse 93834 Peli2 pellino 2 XM_006519742.3 53.7% 47.3% (many diffs)
12 mouse 93834 Peli2 pellino 2 XM_011245231.2 53.6% 49.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1326
ORF length:
1260
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt ttcccctggc caggaggaac actgcgcccc caataaggag ccagtgaaat
121acggggagct ggtggtgctc gggtacaatg gtgctttacc caatggagat agaggacgga
181ggaaaagtag atttgccctc tacaagcggc ccaaggcaaa tggtgtcaaa cccagcaccg
241tccatgtgat atccacgccc caggcatcca aggctatcag ctgcaaaggt caacacagta
301tatcctacac tttgtcaagg aatcagactg tggtggtgga gtacacacat gataaggata
361cggatatgtt tcaggtgggc agatcaacag aaagccctat cgacttcgtt gtcacagaca
421cgatttctgg cagccagaac acggacgaag cccagatcac acagagcacc atatccaggt
481tcgcctgcag gatcgtgtgc gacaggaatg aaccttacac agcacggata ttcgccgccg
541gatttgactc ttccaaaaac atatttcttg gagaaaaggc agcaaagtgg aaaaaccccg
601acggccacat ggatgggctc actactaatg gcgtcctggt gatgcatcca cgagggggct
661tcaccgagga gtcccagccc ggggtctggc gcgagatctc tgtctgtgga gatgtgtaca
721ccttgcgaga aaccaggtcg gcccagcaac gaggaaagct ggtggaaagt gagaccaacg
781tcctgcagga cggctccctc attgacctgt gtggggccac tctcctctgg agaacagcag
841atgggctttt tcatactcca actcagaagc acatagaagc cctccggcag gagattaacg
901ccgcccggcc tcagtgtcct gtggggctca acaccctggc cttccccagc atcaacagga
961aagaggtggt ggaggagaag cagccctggg catatcTCAG TTGTGGCCAC GTGCACGGGT
1021ACCACAACTG GGGCCATCGG AGTGACACGG AGGCCAACGA GAGGGAGTGT CCCATGTGCA
1081GGACTGTGGG CCCCTATGTG CCTCTCTGGC TTGGCTGTGA GGCAGGATTT TATGTAGACG
1141CAGGACCGCC AACTCATGCT TTCACTCCCT GTGGACACGT GTGCTCGGAG AAGTCTGCAA
1201AATACTGGTC TCAGATCCCG TTGCCTCATG GAACTCATGC ATTTCACGCT GCTTGCCCTT
1261TCTGTGCTAC ACAGCTGGTT GGGGAGCAAA ACTGCATCAA ATTAATTTTC CAAGGTCCAA
1321TTGACTGCCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1381TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1441CTTGGCTTTA TATATCTTGT GGAAAGGACG AGCAAGACGT CATATGTCCC CACTCACGCG
1501TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)