Construct: ORF TRCN0000477433

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016477.1_s317c1
Derived from:
ccsbBroadEn_13366
DNA Barcode:
AGCACGCCCTCCCTGCCATATACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PLPP4 (196051)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477433
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 196051 PLPP4 phospholipid phosphatase 4 NM_001318167.1 100% 100%
2 human 196051 PLPP4 phospholipid phosphatase 4 XM_005269592.2 82% 71.7% (many diffs)
3 human 196051 PLPP4 phospholipid phosphatase 4 NM_001030059.2 76.7% 76.3% 257_445del
4 human 196051 PLPP4 phospholipid phosphatase 4 NM_001318166.1 74.8% 48% 255_318del;579_580ins109
5 human 196051 PLPP4 phospholipid phosphatase 4 XM_006717685.4 71.4% 69.3% (many diffs)
6 human 196051 PLPP4 phospholipid phosphatase 4 XM_011539444.3 71.2% 67.6% (many diffs)
7 human 196051 PLPP4 phospholipid phosphatase 4 XM_017015821.2 66.8% 55.8% (many diffs)
8 human 196051 PLPP4 phospholipid phosphatase 4 XM_017015822.1 66.8% 55.8% (many diffs)
9 human 196051 PLPP4 phospholipid phosphatase 4 XM_024447860.1 66.8% 55.8% (many diffs)
10 human 196051 PLPP4 phospholipid phosphatase 4 XM_024447861.1 66.8% 55.8% (many diffs)
11 human 196051 PLPP4 phospholipid phosphatase 4 XM_024447862.1 66.8% 55.8% (many diffs)
12 human 196051 PLPP4 phospholipid phosphatase 4 XM_011539445.2 59.1% 53.7% (many diffs)
13 human 196051 PLPP4 phospholipid phosphatase 4 XM_006717686.4 56.8% 52.3% (many diffs)
14 human 196051 PLPP4 phospholipid phosphatase 4 XM_017015820.1 53.9% 46.9% (many diffs)
15 human 196051 PLPP4 phospholipid phosphatase 4 NM_001318169.1 46.1% 33.1% 165_166ins262;288_289ins74
16 human 196051 PLPP4 phospholipid phosphatase 4 NM_001318168.1 46.1% 30.2% 165_166ins91;288_289ins245
17 human 196051 PLPP4 phospholipid phosphatase 4 XM_017015823.1 46.1% 30.2% 165_166ins91;288_289ins245
18 human 196051 PLPP4 phospholipid phosphatase 4 XM_017015824.2 46.1% 30.2% 165_166ins91;288_289ins245
19 human 196051 PLPP4 phospholipid phosphatase 4 NR_134516.1 45.8% (many diffs)
20 mouse 381925 Plpp4 phospholipid phosphatase 4 XM_017322324.1 91.3% 99.5% (many diffs)
21 mouse 381925 Plpp4 phospholipid phosphatase 4 XM_017322323.1 70.4% 76.6% (many diffs)
22 mouse 381925 Plpp4 phospholipid phosphatase 4 NM_001080963.1 70.1% 76% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
693
ORF length:
624
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcgggagctg gccattgaga tcggggtgcg agccctgctc ttcggagtct
121tcgtttttac agagtttttg gatccgttcc agagagtcat ccagccagaa gagatctggc
181tctataaaaa tcctttggtg caatcagata acatacctac ccgcctcatg tttgcaattt
241ctttcctcac acccctggct gttatttgtg tggtgaaaat tatccggcga acagacaaga
301ctgaaattaa ggaagccttc ttagttgcct tttcgggcct tGGCTTCACG ACGTTCTACT
361TGGCGGGCAA GCTGCACTGC TTCACCGAGA GTGGGCGGGG AAAGAGCTGG CGGCTCTGTG
421CTGCCATCCT GCCCTTGTAC TGCGCCATGA TGATTGCCCT GTCCCGCATG TGCGACTACA
481AGCATCACTG GCAAGATTCC TTTGTGGGTG GAGTCATCGG CCTCATTTTT GCATACATTT
541GCTACAGACA GCACTATCCT CCTCTGGCCA ACACAGCTTG CCATAAACCC TACGTTAGTC
601TGCGAGTCCC AGCCTCACTG AAGAAAGAGG AGAGGCCCAC AGCTGACAGC GCACCCAGCT
661TGCCTCTGGA GGGGATCACC GAAGGCCCGG TATTGCCAAC TTTCTTGTAC AAAGTGGTTG
721ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
781GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAAG
841CACGCCCTCC CTGCCATATA CCACGCGTTA AGTCgacaat caacctctgg attacaaaat
901ttgtgaaaga tt

Download FASTA (ORF) (Full)