Construct: ORF TRCN0000477579
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004309.1_s317c1
- Derived from:
- ccsbBroadEn_12206
- DNA Barcode:
- AGAAACCCATAAAATACACTCAGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC01949 (55338)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477579
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55338 | LINC01949 | long intergenic non-protein... | NR_130914.1 | 15% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 531
- ORF length:
- 462
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gggactctgg cagcaaattt caaactgtat gccagacctg gccctttgca 121 gtgatataaa atttttcttg aggtgtctgg aaagatggct gaataggaac agctctgctc 181 tgcagcTCCC AGCGAGATCA ACGCAGAAGG AGATAATTTC TGCATTTCCA ACTAAAGTAC 241 CCAGCTCATC TCATTGGGAC TGGTTAGACA GTGGGTGCAG CCCACAGAAG GCAAGCAGAA 301 GCAGGGTGGG GTGTCGCCTC ACCCGGGAAG CGCAAGGGGT CAGGGAACTC CCTCCCCTAG 361 CCAAGGGAAG CTGTGAGGGA CTGTGCCGTG AGGAACGGGG CATTCCGGCA CAGATACTAT 421 GCTTTCCCCA CGGTCTTTGC AACCCACAGA CCAGGAGATT CCCTTGGGTG CCTGCACCAC 481 CAGGGCCCTG GGTTTCAAGC AAAAAACTGG GCAGCCATTT GGGCAGACAC TTGCCAACTT 541 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 601 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 661 CTTGTGGAAA GGACGAAGAA ACCCATAAAA TACACTCAGT ACGCGTTAAG TCgacaatca 721 acctctggat tacaaaattt gtgaaagatt