Construct: ORF TRCN0000477589

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015888.1_s317c1
Derived from:
ccsbBroadEn_08854
DNA Barcode:
TCGAAATTATAATTCTGGCCCTCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GALNT17 (64409)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477589
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64409 GALNT17 polypeptide N-acetylgalacto... NM_022479.3 99.9% 100% 1566T>C
2 human 64409 GALNT17 polypeptide N-acetylgalacto... XM_011516467.3 83.8% 83.6% (many diffs)
3 human 64409 GALNT17 polypeptide N-acetylgalacto... XM_017012521.2 64.5% 58.6% (many diffs)
4 human 64409 GALNT17 polypeptide N-acetylgalacto... XM_011516469.3 54.2% 53.5% (many diffs)
5 mouse 212996 Wbscr17 Williams-Beuren syndrome ch... NM_145218.3 89.4% 98.4% (many diffs)
6 mouse 212996 Wbscr17 Williams-Beuren syndrome ch... XM_006504402.3 40.6% 45.1% (many diffs)
7 mouse 212996 Wbscr17 Williams-Beuren syndrome ch... XM_006504403.3 40.6% 45.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1860
ORF length:
1794
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ttcactgaga agagtcaaag tgctgttggt gttgaacttg atcgcggtag
121ccggcttcgt gctcttcctg gccaagtgcc ggcccatcgc ggtgcgcagc ggagacgcct
181tccacgagat ccggccgcgc gccgaggtgg ccaacctcag cgcgcacagc gccagcccca
241tccaggatgc ggtcctgaag cgcctgtcgc tgctggagga catcgtgtac cggcagctga
301atggcttatc caaatccctt gggctcattg aaggttatgg tgggcggggt aaagggggcc
361ttccggctac tctttccccg gctgaagaag aaaaggctaa gggaccccat gagaagtatg
421gctacaattc atacctcagt gaaaaaattt cactggaccg ttccattccg gattatcgtc
481ccaccaagtg taaggagctc aagtactcca aggacctgcc ccagatatcc atcatattca
541tcttcgtgaa cgaggccctg tcggtgatcc tgcggtccgt gcacagtgcc gtcaatcaca
601cgcccacaca cctgctgaag gaaatcattc tggtggatga caacagcgac gaagaggagc
661tgaaggtccc cctagaggag tatgtccaca aacgctaccc cgggctggtg aaggtggtaa
721gaaatcagaa gagggaaggc ctgatccgcg ctcgcattga gggctggaag gtggctaccg
781ggcaggtcac tggcttcttt gatgcccacg tggaattcac cgctggctgg gctgagccgg
841ttctatcccg catccaggaa aaccggaagc gtgtgatcct cccctccatt gacaacatca
901aacaggacaa ctttgaggtg cagcggtacg agaactcggc ccacgggtac agctgggagc
961tgtggtgcat gtacatcagc cccccaaaag actggtggga cgccggagac ccttctctcc
1021ccatcaggac cccagccatg ataggctgct cgttcgtggt caacaggaag ttcttcggtg
1081aaattggtct tctggatcct ggcatggatg tatacggagg agaaaatatt gaactgggaa
1141tcaaggtatg gctctgtggg ggcagcatgg aggtccttcc ttgctcacgg gtggcccaca
1201ttgagcggaa gaagaagcca tataatagca acattggctt ctacaccaag aggaatgctc
1261ttcgcgttgc tgaggtctgg atggacgatt acaagtctca tgtgtacata gcgtggaacc
1321tgccgctgga gaatccggga attgacatcg gtgatgtcTC CGAAAGAAGA GCATTAAGGA
1381AAAGTTTAAA GTGTAAGAAT TTCCAGTGGT ACCTGGACCA TGTTTACCCA GAAATGAGAA
1441GATACAATAA TACCGTTGCT TACGGGGAGC TTCGCAACAA CAAGGCAAAA GACGTCTGCT
1501TGGACCAGGG GCCGCTGGAG AACCACACAG CAATATTGTA TCCGTGCCAT GGCTGGGGAC
1561CACAGCTTGC CCGCTACACC AAGGAAGGCT TCCTGCACTT GGGTGCCCTG GGGACCACCA
1621CACTCCTCCC CGACACCCGC TGCCTGGTGG ACAACTCCAA GAGTCGGCTG CCCCAGCTCC
1681TGGACTGCGA CAAGGTCAAG AGCAGCCTGT ACAAGCGCTG GAACTTCATC CAGAATGGAG
1741CCATCATGAA CAAGGGCACG GGACGCTGCC TGGAGGTGGA GAACCGGGGC CTGGCTGGCA
1801TCGACCTCAT CCTCCGCAGC TGCACAGGTC AGAGGTGGAC CATTAAGAAC TCCATCAAGT
1861ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1921GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1981TTTATATATC TTGTGGAAAG GACGATCGAA ATTATAATTC TGGCCCTCAA CGCGTTAAGT
2041Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)