Construct: ORF TRCN0000477654
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004564.1_s317c1
- Derived from:
- ccsbBroadEn_12013
- DNA Barcode:
- AACCACGTCATAGCAGGAAAACCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UIMC1 (51720)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477654
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 51720 | UIMC1 | ubiquitin interaction motif... | NM_001317961.1 | 99.8% | 100% | 228C>T;846C>A |
2 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_017009575.1 | 89% | 89.1% | 228C>T;700_900del;1047C>A |
3 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_005265932.3 | 79% | 79.2% | 228C>T;357_358ins345;501C>A |
4 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_005265933.2 | 79% | 79.2% | 228C>T;357_358ins345;501C>A |
5 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_017009576.1 | 79% | 79.2% | 228C>T;357_358ins345;501C>A |
6 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_017009577.1 | 79% | 79.2% | 228C>T;357_358ins345;501C>A |
7 | human | 51720 | UIMC1 | ubiquitin interaction motif... | NM_001199297.2 | 76.8% | 76.9% | 228C>T;700_1197del;1344C>A |
8 | human | 51720 | UIMC1 | ubiquitin interaction motif... | NM_001199298.2 | 76.8% | 76.9% | 228C>T;700_1197del;1344C>A |
9 | human | 51720 | UIMC1 | ubiquitin interaction motif... | NM_016290.4 | 76.8% | 76.9% | 228C>T;700_1197del;1344C>A |
10 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_005265930.2 | 76.8% | 76.9% | 228C>T;700_1197del;1344C>A |
11 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_006714871.2 | 76.8% | 76.9% | 228C>T;700_1197del;1344C>A |
12 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_005265934.2 | 68.9% | 58.2% | (many diffs) |
13 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_005265935.2 | 68.9% | 58.2% | (many diffs) |
14 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_006714874.2 | 68.9% | 58.2% | (many diffs) |
15 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_017009574.2 | 66% | 66% | 0_1ins234;466_963del;1110C>A |
16 | human | 51720 | UIMC1 | ubiquitin interaction motif... | NR_146150.1 | 63.1% | (many diffs) | |
17 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_005265936.2 | 63% | 58.3% | 0_1ins373;88_89ins239;234C>A |
18 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_017009578.1 | 63% | 58.3% | 0_1ins373;88_89ins239;234C>A |
19 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_017009579.1 | 63% | 58.3% | 0_1ins373;88_89ins239;234C>A |
20 | human | 51720 | UIMC1 | ubiquitin interaction motif... | NR_146149.1 | 61.4% | (many diffs) | |
21 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_011534570.1 | 51.1% | 51% | (many diffs) |
22 | human | 51720 | UIMC1 | ubiquitin interaction motif... | XM_011534568.2 | 50.6% | 49.7% | (many diffs) |
23 | mouse | 20184 | Uimc1 | ubiquitin interaction motif... | XM_006517167.2 | 73.3% | 65.1% | (many diffs) |
24 | mouse | 20184 | Uimc1 | ubiquitin interaction motif... | NM_011307.2 | 63.5% | 56.3% | (many diffs) |
25 | mouse | 20184 | Uimc1 | ubiquitin interaction motif... | XM_006517166.2 | 63.5% | 56.3% | (many diffs) |
26 | mouse | 20184 | Uimc1 | ubiquitin interaction motif... | XM_011244499.1 | 52.8% | 47.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1725
- ORF length:
- 1659
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgcc acggagaaag aaaaaagtta aagaagtctc cgaatctcgg aacctggaga 121 agaaggatgt ggaaactacc agttctgtca gtgtgaagag gaagcgtaga cttgaggatg 181 cattcattgt gatatccgat agtgatggag aggaaccaaa ggaggaaaat gggttgcaga 241 aaacgaagac aaaacagtcg aatagagcaa agtgtttggc caaaagaaaa attgcacaga 301 tgacagaaga agaacagttt gctctggctc tcaaaatgag tgagcaggaa gctagggagg 361 tgaacagcca ggaggaggaa gaagaggagc tcttgaggaa agccattgct gaaagcctga 421 atagttgccg gccttctgat gcttccgcta ccagatctcg acctctggcc actggaccgt 481 cttcccagtc ccatcaagag aaaaccacag actctgggct cactgaaggc atatggcagc 541 tggtacctcc atcactgttt aaaggctcac atatcagtca gggaaacgag gctgaggaaa 601 gagaggagcc ttgggaccac actgaaaaaa ctgaagagga gccggtctct ggcagctcag 661 gaagctggga ccagtcaagc cagccagtgt ttgagaatgt gaacgttaaa tcttttgaca 721 gatgtactgg ccactcggct gagcacacac agtgtgggaa gccacagtct tcccaaggga 781 ttgttgaaga aacttctgaa gagggaaact ctgtacctgc ttcacaaagt gttgctgctt 841 tgaccagtaa gagaagctta gtccttatgc cagagagttc tgcagaagaa atcactgttt 901 gtcctgagac acagctaagt tcctctgaaa cttttgacct tgaaagagaa gtctctccag 961 gtagcagaga tatcttggat ggagtcagaa taataatggc agataaggag gttggtaaca 1021 aggaagatgc tgagaaggaa gtagctattt ctaccttctc atccagtaac caggtatcct 1081 gcccgctatg tgaccaatgc tttccaccca caaagattga acgacatgcc atgtactgca 1141 atggtctgat ggaggaagat acagtattga ctcggagaca aaaagaggcc aagaccaaga 1201 gtgacagtgg gacagctgcc cagacttctc tagacattga caagaatgag aagtgttacc 1261 tctgtaaatc cctggTCCCA TTTAGAGAGT ATCAGTGTCA TGTGGACTCC TGTCTCCAGC 1321 TTGCAAAGGC TGACCAAGGA GATGGACCTG AAGGGAGTGG AAGAGCATGT TCAACTGTGG 1381 AGGGGAAGTG GCAGCAGAGG CTGAAGAACC CAAAGGAAAA AGGCCACAGT GAAGGCCGAC 1441 TCCTTAGTTT CTTGGAACAG TCTGAGCACA AGACTTCAGA TGCAGACATC AAGTCTTCAG 1501 AAACAGGAGC CTTCAGGGTG CCTTCACCAG GGATGGAAGA GGCAGGCTGC AGCAGAGAGA 1561 TGCAGAGTTC TTTCACACGT CGTGACTTAA ATGAATCTCC CGTCAAGTCT TTTGTTTCCA 1621 TTTCAGAAGC CACAGATTGC TTAGTGGACT TTAAAAAGCA AGTTACTGTC CAGCCAGGTA 1681 GTCGGACACG GACCAAAGCT GGCAGAGGAA GAAGGAGAAA ATTCTGCCCA ACTTTCTTGT 1741 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1801 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 1861 GAAAGGACGA AACCACGTCA TAGCAGGAAA ACCGACGCGT TAAGTCgaca atcaacctct 1921 ggattacaaa atttgtgaaa gatt