Construct: ORF TRCN0000477820

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015667.1_s317c1
Derived from:
ccsbBroadEn_02833
DNA Barcode:
CTACAGTTACTGCCCCAACATCGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CADM1 (23705)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477820
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23705 CADM1 cell adhesion molecule 1 NM_014333.4 100% 100%
2 human 23705 CADM1 cell adhesion molecule 1 NM_001301044.2 97.5% 97.5% 1078_1110del
3 human 23705 CADM1 cell adhesion molecule 1 XM_005271494.3 95.4% 94.5% (many diffs)
4 human 23705 CADM1 cell adhesion molecule 1 NM_001301045.2 94.8% 94.3% (many diffs)
5 human 23705 CADM1 cell adhesion molecule 1 NM_001301043.2 93.8% 93.8% 1076_1162del
6 human 23705 CADM1 cell adhesion molecule 1 NM_001098517.2 93.6% 93.6% 993_994ins84
7 human 23705 CADM1 cell adhesion molecule 1 XM_017017457.2 84.5% 83.4% (many diffs)
8 mouse 54725 Cadm1 cell adhesion molecule 1 NM_018770.3 92.2% 97.9% (many diffs)
9 mouse 54725 Cadm1 cell adhesion molecule 1 NM_207675.2 89.9% 95.6% (many diffs)
10 mouse 54725 Cadm1 cell adhesion molecule 1 NM_207676.2 87.7% 92.5% (many diffs)
11 mouse 54725 Cadm1 cell adhesion molecule 1 XM_006510497.3 87.3% 92.3% (many diffs)
12 mouse 54725 Cadm1 cell adhesion molecule 1 NM_001310841.1 86.5% 91.9% (many diffs)
13 mouse 54725 Cadm1 cell adhesion molecule 1 NM_001025600.1 85.9% 91.6% (many diffs)
14 mouse 54725 Cadm1 cell adhesion molecule 1 XM_017313489.1 60.9% 64.2% (many diffs)
15 mouse 54725 Cadm1 cell adhesion molecule 1 XM_017313487.1 58.5% 61.7% (many diffs)
16 mouse 54725 Cadm1 cell adhesion molecule 1 XM_017313488.1 58.5% 61.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1395
ORF length:
1326
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcgagtgta gtgctgccga gcggatccca gtgtgcggcg gcagcggcgg
121cggcggcgcc tcccgggctc cggctccggc ttctgctgtt gctcttctcc gccgcggcac
181tgatccccac aggtgatggg cagaatctgt ttacgaaaga cgtgacagtg atcgagggag
241aggttgcgac catcagttgc caagtcaata agagtgacga ctctgtgatt cagctactga
301atcccaacag gcagaccatt tatttcaggg acttcaggcc tttgaaggac agcaggtttc
361agttgctgaa tttttctagc agtgaactca aagtatcatt gacaaacgtc tcaatttctg
421atgaaggaag atacttttgc cagctctata ccgatccccc acaggaaagt tacaccacca
481tcacagtcct ggtcccacca cgtaatctga tgatcgatat ccagaaagac actgcggtgg
541aaggtgagga gattgaagtc aactgcactg ctatggccag caagccagcc acgactatca
601ggtggttcaa agggaacaca gagctaaaag gcaaatcgga ggtggaagag tggtcagaca
661tgtacactgt gaccagtcag ctgatgctga aggtgcacaa ggaggacgat ggggtcccag
721tgatctgcca ggtggagcac cctgcggtca ctggaaacct gcagacccag cggtatctag
781aagtacagta taagcctcaa gtgcacattc agatgactta tcctctacaa ggcttaaccc
841gggaagggga cgcgcttgag ttaacatgtg aagccatcgg gaagccccag cctgtgatgg
901taacttgggt gagagtcgat gatgaaatgc ctcaacacgc cgtactgtct gggcccaacc
961tgttcatcaa taacctaaac aaaacagata atggtacata ccgctgtgaa gcttcaaaca
1021tagtggggaa agctcactcg gattatatgc tgtatgtata cgatcccccc acaactatcc
1081ctcctcccac aacaaccacc accaccacca ccaccaccac caccaccatc cttaccatca
1141tcacagattc ccgagcaggt gaagaaggct cgatcagggc agtggatcat gccgtgatcg
1201gtggcgtcgt ggcggtggtg gtgttcgcca tgctgtgctt gctcatcatt cTGGGGCGCT
1261ATTTTGCCAG ACATAAAGGT ACATACTTCA CTCATGAAGC CAAAGGAGCC GATGACGCAG
1321CAGACGCAGA CACAGCTATA ATCAATGCAG AAGGAGGACA GAACAACTCC GAAGAAAAGA
1381AAGAGTACTT CATCTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
1441CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
1501TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA CTACAGTTAC TGCCCCAACA
1561TCGAACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)