Construct: ORF TRCN0000477827

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001151.1_s317c1
Derived from:
ccsbBroadEn_01980
DNA Barcode:
CTCACCGCCTCGTGATCGCTTCTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KCNK5 (8645)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477827
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8645 KCNK5 potassium two pore domain c... NM_003740.4 100% 100%
2 human 8645 KCNK5 potassium two pore domain c... XM_005249456.1 99.3% 99.3% 456_457insGTGAGTCTG
3 human 8645 KCNK5 potassium two pore domain c... XM_006715235.2 63.5% 63.5% 0_1ins546
4 mouse 16529 Kcnk5 potassium channel, subfamil... NM_021542.4 84.3% 88.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1563
ORF length:
1497
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt ggaccggggc cctctgctca cctcggccat catcttctac ctggccatcg
121gggcggcgat cttcgaagtg ctggaggagc cacactggaa ggaggccaag aaaaactact
181acacacagaa gctgcatctg ctcaaggagt tcccgtgcct gggtcaggag ggcctggaca
241agatcctaga ggtggtatct gatgctgcag gacagggtgt ggccatcaca gggaaccaga
301ccttcaacaa ctggaactgg cccaatgcaa tgatttttgc agcgaccgtc attaccacca
361ttggatatgg caatgtggct cccaagaccc ccgccggtcg cctcttctgt gttttctatg
421gtctcttcgg ggtgccgctc tgcctgacgt ggatcagtgc cctgggcaag ttcttcgggg
481gacgtgccaa gagactaggg cagttcctta ccaagagagg tgtgagtctg cggaaggcgc
541agatcacgtg cacagtcatc ttcatcgtgt ggggcgtcct agtccacctg gtgatcccac
601ccttcgtatt catggtgact gaggggtgga actacatcga gggcctctac tactccttca
661tcaccatctc caccatcggc ttcggtgact ttgtggccgg tgtgaacccc agcgccaact
721accacgccct gtaccgctac ttcgtggagc tctggatcta cttggggctg gcctggctgt
781ccctttttgt caactggaag gtgagcatgt ttgtggaagt ccacaaagcc attaagaagc
841ggcggcggcg acggaaggag tcctttgaga gctccccaca ctcccggaag gccctgcagg
901tgaaggggag cacagcctcc aaggacgtca acatcttcag ctttctttcc aagaaggaag
961agacctacaa cgacctcatc aagcagatcg ggaagaaggc catgaagaca agcgggggtg
1021gggagacggg cccgggccca gggctggggc ctcaaggcgg tgggctccca gcactgcccc
1081cttccctggt gcccctggta gtctactcca agaaccgggt gcccaccttg gaagaggtgt
1141cacagacact gaggagcaaa ggccacgtat caaggtccCC AGATGAGGAG GCTGTGGCAC
1201GGGCCCCTGA AGACAGCTCC CCTGCCCCCG AGGTGTTCAT GAACCAGCTG GACCGCATCA
1261GCGAGGAATG CGAGCCATGG GACGCCCAGG ACTACCACCC ACTCATCTTC CAGGACGCCA
1321GCATCACCTT CGTGAACACG GAGGCTGGCC TCTCAGACGA GGAGACCTCC AAGTCCTCGC
1381TAGAGGACAA CTTGGCAGGG GAGGAGAGCC CCCAGCAGGG GGCTGAAGCC AAGGCGCCCC
1441TGAACATGGG CGAGTTCCCC TCCTCCTCCG AGTCCACCTT CACCAGCACT GAGTCTGAGC
1501TCTCTGTGCC TTACGAACAG CTGATGAATG AGTACAACAA GGCTAACAGC CCCAAGGGCA
1561CATGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1621TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1681GGCTTTATAT ATCTTGTGGA AAGGACGACT CACCGCCTCG TGATCGCTTC TGACGCGTTA
1741AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)