Construct: ORF TRCN0000477885

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010939.1_s317c1
Derived from:
ccsbBroadEn_09898
DNA Barcode:
TTTCCCCCCGACATGCCATGGAAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBC1D28 (254272)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477885
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 254272 TBC1D28 TBC1 domain family member 28 NM_001039397.2 99.8% 99.5% 167A>C
2 human 353149 TBC1D26 TBC1 domain family member 26 NM_178571.4 79.2% 73.6% (many diffs)
3 human 254272 TBC1D28 TBC1 domain family member 28 XM_011523783.3 71.7% 65.7% (many diffs)
4 human 254272 TBC1D28 TBC1 domain family member 28 XM_011523781.2 63.8% 60.3% (many diffs)
5 human 254272 TBC1D28 TBC1 domain family member 28 XM_024450684.1 63.8% 60.3% (many diffs)
6 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024422.1 58.8% 51.8% (many diffs)
7 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024416.2 54% 48% (many diffs)
8 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024417.2 54% 48% (many diffs)
9 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024418.2 54% 48% (many diffs)
10 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024419.2 54% 48% (many diffs)
11 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024420.1 54% 48% (many diffs)
12 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024421.2 54% 48% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
699
ORF length:
630
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggagatggat gaggacccgg ataacctgcc tgcccagggg caaggcaata
121tcatcattac taagtatgag cagggacacc gagctggggc agcagtggac ttggggcatg
181agcaggttga tgtcagaaaa tacaccaata acctcgggat tgtgcatgag atggcgctgc
241cccgcgtcag tgccctggag gtgaagcaaa gacgcaagga aagtaaacgt accaacaagt
301ggcaaaagat gcttgcagac tggacaaaat ataggagcac caagaagctg tctcaaagag
361tatgcaaagt cattcccctG GCGGTGCGGG GCCGGGCGTT GTCACTTTTG CTAGATATTG
421ACAAAATCAA GTCCCAGAAC CCAGGCAAAT ATAAGGTCAT GAAGGAGAAG GGCAAGAGGT
481CCTCCAGAAT CATCCACTGC ATCCAGCTAG ATGTCAGCCA CACCCTGCAG AAACACATGA
541TGTTCATACA AAGATTCGGA GTCAAGCAGC AGGAATTATG TGACATCCTC GTGGCCTATT
601CTGCATATAA CCCTGTGAGT ATTCCCGGGC AGCGATATTC CTGGTACCTG TGCCCATATT
661CACAGGCATG GGTGTCTCTC GGGGGTGTTG CAACTTCTTT GCCAACTTTC TTGTACAAAG
721TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
781GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
841ACGATTTCCC CCCGACATGC CATGGAATAC GCGTTAAGTC gacaatcaac ctctggatta
901caaaatttgt gaaagatt

Download FASTA (ORF) (Full)