Construct: ORF TRCN0000477985
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018372.1_s317c1
- Derived from:
- ccsbBroadEn_13664
- DNA Barcode:
- GGTTGACGTCGGCTACCACGCATT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD20A11P (391267)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477985
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 391267 | ANKRD20A11P | ankyrin repeat domain 20 fa... | NR_027270.1 | 24.3% | (many diffs) | |
| 2 | human | 440482 | ANKRD20A5P | ankyrin repeat domain 20 fa... | NR_040113.1 | 7.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 399
- ORF length:
- 306
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGAAGTT GTTCGGCTTC AGGAGCCACA 121 GGGGCCAGAC GGTCCTGGGC ACCATAGACC ACCTGTACAC GGGTTCCGGG TACCGAATCC 181 GGTACTCGGA ACTGCAGAAG ATCCACAAGG CAGCTGTCAA GGGCGACGCC GCGGAGATGG 241 AGCGCTGTCT GGCGCGCAGG AGCGGAGACC TGGACGCCCT GGACAAGCAG CACAGAGTCT 301 CACTTCTTTG CCCAGGCTGG TGTCCAATGG CACAATCTTG GCTCACTGCA ACCGCTGCCT 361 CCCGGGTTCA AGCAATTCTC CTCGCTCAGC CTCCCAAGTT GCCAACTTTC TTGTACAAAG 421 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 481 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 541 ACGAGGTTGA CGTCGGCTAC CACGCATTAC GCGTTAAGTC gacaatcaac ctctggatta 601 caaaatttgt gaaagatt