Construct: ORF TRCN0000478014
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004290.1_s317c1
- Derived from:
- ccsbBroadEn_10043
- DNA Barcode:
- ATTTTTTGTTACGCAATAGTATCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HNRNPCL1 (343069)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478014
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 343069 | HNRNPCL1 | heterogeneous nuclear ribon... | NM_001013631.2 | 100% | 100% | |
| 2 | human | 440563 | HNRNPCL2 | heterogeneous nuclear ribon... | NM_001136561.3 | 97.2% | 96.2% | (many diffs) |
| 3 | human | 649330 | HNRNPCL3 | heterogeneous nuclear ribon... | NM_001146181.2 | 95.4% | 93.5% | (many diffs) |
| 4 | human | 101060301 | HNRNPCL4 | heterogeneous nuclear ribon... | NM_001302551.1 | 95.3% | 93.5% | (many diffs) |
| 5 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | NM_001077443.1 | 94.6% | 90.7% | (many diffs) |
| 6 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | NM_004500.3 | 94.6% | 90.7% | (many diffs) |
| 7 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_006720125.3 | 94.6% | 90.7% | (many diffs) |
| 8 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_011536712.2 | 94.6% | 90.7% | (many diffs) |
| 9 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_017021252.2 | 94.6% | 90.7% | (many diffs) |
| 10 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_017021253.2 | 94.6% | 90.7% | (many diffs) |
| 11 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_024449558.1 | 94.6% | 90.7% | (many diffs) |
| 12 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_024449559.1 | 94.6% | 90.7% | (many diffs) |
| 13 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | NM_001077442.1 | 90.6% | 86.9% | (many diffs) |
| 14 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | NM_031314.2 | 90.6% | 86.9% | (many diffs) |
| 15 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_011536708.1 | 90.6% | 86.9% | (many diffs) |
| 16 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_011536709.3 | 90.6% | 86.9% | (many diffs) |
| 17 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_011536710.2 | 90.6% | 86.9% | (many diffs) |
| 18 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_011536711.2 | 90.6% | 86.9% | (many diffs) |
| 19 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_024449556.1 | 90.6% | 86.9% | (many diffs) |
| 20 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_024449557.1 | 90.6% | 86.9% | (many diffs) |
| 21 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | NM_001170983.1 | 88.3% | 88.7% | (many diffs) |
| 22 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_006518578.2 | 88.3% | 88.7% | (many diffs) |
| 23 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315857.1 | 88.3% | 88.7% | (many diffs) |
| 24 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315858.1 | 88.3% | 88.7% | (many diffs) |
| 25 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | NM_001170984.1 | 88% | 88.4% | (many diffs) |
| 26 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_006518581.2 | 88% | 88.4% | (many diffs) |
| 27 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315859.1 | 88% | 88.4% | (many diffs) |
| 28 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | NM_001170981.1 | 86.4% | 86.7% | (many diffs) |
| 29 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | NM_001170982.1 | 86.4% | 86.7% | (many diffs) |
| 30 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315855.1 | 86.4% | 86.7% | (many diffs) |
| 31 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315856.1 | 86.4% | 86.7% | (many diffs) |
| 32 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_006518574.2 | 84.5% | 85% | (many diffs) |
| 33 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315850.1 | 84.5% | 85% | (many diffs) |
| 34 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315851.1 | 84.5% | 85% | (many diffs) |
| 35 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_011244965.2 | 84.3% | 84.6% | (many diffs) |
| 36 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315852.1 | 84.3% | 84.6% | (many diffs) |
| 37 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315853.1 | 84.3% | 84.6% | (many diffs) |
| 38 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315854.1 | 84.3% | 84.6% | (many diffs) |
| 39 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | NM_016884.3 | 82.9% | 83.1% | (many diffs) |
| 40 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_006518571.3 | 82.9% | 83.1% | (many diffs) |
| 41 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_006518572.3 | 82.9% | 83.1% | (many diffs) |
| 42 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315849.1 | 82.9% | 83.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 948
- ORF length:
- 879
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggccagcaac gttaccaaca agatggatcc tcactccatg aactcccgtg 121 tgttcattgg gaatctcaac actcttgttg tcaagaaatc ggatgtggag gcgatctttt 181 ccaagtatgg caaaattgcg ggctgctctg ttcataaggg ctttgccttc gttcaatatg 241 ataaggagaa aaatgcccgg gctgctgtag caggagagga tggcagaatg attgctagcc 301 aggttgtaga tattaacctg gctgcggagc caaaagtgaa ccgaggaaac gcaggtgtga 361 aacgatcagc agcggagatg tacggctcct cttttgactt ggactatggc tttcaacggg 421 attattatga tggaatgtac agtttcccag cacgtgtacc tcctcctcct cccattgctc 481 tggctgtagt gccctcgaaa cgtcaacgtc tatcaggaaa cacctcacga aggggcaaaa 541 gtggcttcaa ttctaagagt ggaaagcggg gatcttccaa gtctggaaag ttgaaaggtg 601 atgaccttca ggccattaag caggagttga cccagataaa acagaaagtg gattctctcc 661 tggaaaacct ggaaaaaatt gaaaaggaac agagcaaaca agaggtagag gtgaaaaatg 721 ctaagtcaga agaggagcag agcagtagct ccatgaagaa agatgagact catgtgaaga 781 tggagtctga ggggggtgca gaagactctg ctgaggaggg ggacccactg gatgatgatg 841 ttaatgaaga tcagggggat gaccagctgg agttgatcaa ggatgatgaa aaagaggctg 901 agGAAGGAGA GGATGACAGA GACAGCACCA ATGGCCAGGA TGACTCTTTG CCAACTTTCT 961 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 1021 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 1081 GTGGAAAGGA CGAATTTTTT GTTACGCAAT AGTATCCACG CGTTAAGTCg acaatcaacc 1141 tctggattac aaaatttgtg aaagatt