Construct: ORF TRCN0000478105
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004774.1_s317c1
- Derived from:
- ccsbBroadEn_02629
- DNA Barcode:
- CCCAGTGCAAACAATACCGTTGCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GLMN (11146)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478105
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11146 | GLMN | glomulin, FKBP associated p... | NM_053274.3 | 100% | 100% | |
| 2 | human | 11146 | GLMN | glomulin, FKBP associated p... | XM_011540546.2 | 100% | 100% | |
| 3 | human | 11146 | GLMN | glomulin, FKBP associated p... | NM_001319683.1 | 97.6% | 97.6% | 1097_1098ins42 |
| 4 | human | 11146 | GLMN | glomulin, FKBP associated p... | XM_017000137.1 | 94.7% | 94.7% | 1_99del |
| 5 | human | 11146 | GLMN | glomulin, FKBP associated p... | XM_017000141.1 | 93% | 91.7% | (many diffs) |
| 6 | human | 11146 | GLMN | glomulin, FKBP associated p... | XM_005270401.3 | 92.9% | 92.9% | 39_40ins126 |
| 7 | human | 11146 | GLMN | glomulin, FKBP associated p... | XM_017000138.1 | 92.5% | 92.5% | 1_99del;1196_1197ins42 |
| 8 | human | 11146 | GLMN | glomulin, FKBP associated p... | XM_017000139.1 | 88.1% | 86.9% | (many diffs) |
| 9 | human | 11146 | GLMN | glomulin, FKBP associated p... | XM_017000140.1 | 88% | 88% | 1_99del;138_139ins126 |
| 10 | human | 11146 | GLMN | glomulin, FKBP associated p... | NR_135089.1 | 83.1% | 1_115del;1327_1328ins85;1813_1957del | |
| 11 | human | 11146 | GLMN | glomulin, FKBP associated p... | XM_006710309.2 | 71.8% | 71.8% | 0_1ins501 |
| 12 | human | 11146 | GLMN | glomulin, FKBP associated p... | XM_017000142.1 | 69.5% | 69.5% | 0_1ins501;596_597ins42 |
| 13 | human | 11146 | GLMN | glomulin, FKBP associated p... | XM_017000143.1 | 69.5% | 69.5% | 0_1ins501;596_597ins42 |
| 14 | human | 11146 | GLMN | glomulin, FKBP associated p... | XR_002959249.1 | 65.6% | (many diffs) | |
| 15 | human | 11146 | GLMN | glomulin, FKBP associated p... | XR_002959248.1 | 57.6% | (many diffs) | |
| 16 | human | 11146 | GLMN | glomulin, FKBP associated p... | XM_017000144.1 | 56.7% | 56.7% | 0_1ins771 |
| 17 | mouse | 170823 | Glmn | glomulin, FKBP associated p... | NM_001161738.1 | 85.8% | 85.6% | (many diffs) |
| 18 | mouse | 170823 | Glmn | glomulin, FKBP associated p... | NM_133248.2 | 85.8% | 85.6% | (many diffs) |
| 19 | mouse | 170823 | Glmn | glomulin, FKBP associated p... | XM_006534800.3 | 85.8% | 85.6% | (many diffs) |
| 20 | mouse | 170823 | Glmn | glomulin, FKBP associated p... | NM_001161739.1 | 77.1% | 76.2% | (many diffs) |
| 21 | mouse | 170823 | Glmn | glomulin, FKBP associated p... | XR_001784631.1 | 67.1% | (many diffs) | |
| 22 | mouse | 170823 | Glmn | glomulin, FKBP associated p... | XM_011249410.2 | 42.7% | 42.4% | (many diffs) |
| 23 | mouse | 170823 | Glmn | glomulin, FKBP associated p... | XM_017320694.1 | 42.7% | 42.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1848
- ORF length:
- 1782
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc tgtagaggaa cttcagtcta taataaagag atgtcaaatc ctagaagagc 121 aagactttaa agaagaggat tttggcctat ttcagttagc tgggcaaaga tgcatagaag 181 aagggcacac agaccagcta ttagaaatta ttcaaaatga aaagaataag gtcatcatca 241 agaatatggg ctggaatctc gttggtcctg ttgttcgatg ccttttgtgt aaagataaag 301 aggatagtaa aagaaaagtt tattttttga tctttgattt attggtaaag ttatgcaatc 361 caaaggaatt attgttgggt ttgcttgaac tgattgaaga gccctctgga aaacagatat 421 cccaaagtat tcttcttttg cttcagccat tacaaacagt gattcagaaa cttcataaca 481 aggcatattc aattggatta gcattgtcta ccctttggaa tcagctatct cttcttcctg 541 ttccatactc aaaagaacaa atacaaatgg atgactatgg cctttgtcag tgttgcaagg 601 ccttaataga gttcactaag ccttttgtgg aagaagtcat tgataacaaa gaaaactcac 661 tggaaaatga aaagttaaag gatgaattac tgaaattttg tttcaaaagc ttgaaatgcc 721 ctttgctgac agcacaattc tttgaacagt ctgaagaagg tggaaatgat cctttcaggt 781 attttgcatc agaaataata ggttttttat cagcaattgg acaccctttc cccaaaatga 841 tttttaatca tggaaggaaa aagagaactt ggaattacct tgaatttgaa gaagaagaaa 901 ataaacagtt agcagactca atggcttctc tggcatatct agtatttgta cagggcatcc 961 atattgatca gcttccaatg gtcttaagcc cattgtacct tttgcagttt aatatggggc 1021 acattgaagt ctttttgcaa agaacagaag agtctgttat ctccaaagga ttggagctgc 1081 tggagaatag tttattgaga atagaagaca atagtctact ttaccagtac ttagaaatca 1141 agagttttct tactgtacct cagggcttag tgaaagtaat gacactttgc cccattgaga 1201 cactgaggaa aaagagttta gctatgcttc agctgtatat taacaagttg gattcacaag 1261 gcaaatatac attatttagg tgcttattga atacaagtaa tcactcaggt gtggaggctt 1321 ttattattca aaatatcaaa aatcaaattg acatgtcatt aaagagaaca cgtaacaaca 1381 aatggtttac aggaccacag ttgatttccc ttcttgattt ggtacttttt ctcccagagg 1441 gtgcagaaac agatttactg caaaACTCAG ATAGGATTAT GGCTTCATTA AATTTATTGA 1501 GGTATTTGGT TATCAAAGAT AATGAAAATG ACAATCAAAC TGGATTATGG ACAGAACTTG 1561 GAAATATTGA GAATAATTTC TTAAAGCCAC TTCATATAGG ACTTAATATG TCAAAAGCAC 1621 ATTATGAAGC AGAAATTAAA AATAGCCAAG AGGCCCAGAA ATCTAAAGAT CTTTGTTCTA 1681 TAACTGTAAG TGGAGAAGAG ATCCCTAATA TGCCTCCTGA AATGCAGCTT AAGGTCCTGC 1741 ATTCAGCTCT TTTCACATTT GATTTGATTG AAAGTGTTCT AGCTCGAGTG GAAGAACTCA 1801 TTGAAATAAA AACAAAGTCT ACCTCTGAAG AAAATATTGG GATAAAGTGC CCAACTTTCT 1861 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 1921 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 1981 GTGGAAAGGA CGACCCAGTG CAAACAATAC CGTTGCGACG CGTTAAGTCg acaatcaacc 2041 tctggattac aaaatttgtg aaagatt