Transcript: Mouse NM_001161739.1

Mus musculus glomulin, FKBP associated protein (Glmn), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Glmn (170823)
Length:
1823
CDS:
133..1731

Additional Resources:

NCBI RefSeq record:
NM_001161739.1
NBCI Gene record:
Glmn (170823)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001161739.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000012863 GCCACTTCATATAGGACTTAA pLKO.1 1455 CDS 100% 13.200 18.480 N Glmn n/a
2 TRCN0000012866 CCGTTGGACTAGCATTGTCAA pLKO.1 557 CDS 100% 4.950 6.930 N Glmn n/a
3 TRCN0000337466 CCGTTGGACTAGCATTGTCAA pLKO_005 557 CDS 100% 4.950 6.930 N Glmn n/a
4 TRCN0000012864 GCCTTGATAGAGTTCACGAAA pLKO.1 667 CDS 100% 4.950 3.960 N Glmn n/a
5 TRCN0000373988 AGTTGAACATGGAGCATATTG pLKO_005 1070 CDS 100% 13.200 9.240 N Glmn n/a
6 TRCN0000011034 CCCTTTGCTGACAGCACAATT pLKO.1 783 CDS 100% 13.200 9.240 N GLMN n/a
7 TRCN0000337525 CCCTTTGCTGACAGCACAATT pLKO_005 783 CDS 100% 13.200 9.240 N Glmn n/a
8 TRCN0000342547 CCCTTTGCTGACAGCACAATT pLKO_005 783 CDS 100% 13.200 9.240 N GLMN n/a
9 TRCN0000012865 GCACATTATGAAGCAGAAATT pLKO.1 1486 CDS 100% 13.200 9.240 N Glmn n/a
10 TRCN0000337529 GCACATTATGAAGCAGAAATT pLKO_005 1486 CDS 100% 13.200 9.240 N Glmn n/a
11 TRCN0000006578 GCCTCCTGAAATGCAGCTTAA pLKO.1 1593 CDS 100% 10.800 7.560 N GLMN n/a
12 TRCN0000342546 GCCTCCTGAAATGCAGCTTAA pLKO_005 1593 CDS 100% 10.800 7.560 N GLMN n/a
13 TRCN0000012867 CGCTCTCTTCACATTTGACTT pLKO.1 1626 CDS 100% 4.950 3.465 N Glmn n/a
14 TRCN0000337530 CGCTCTCTTCACATTTGACTT pLKO_005 1626 CDS 100% 4.950 3.465 N Glmn n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001161739.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02629 pDONR223 100% 77.1% 76.2% None (many diffs) n/a
2 ccsbBroad304_02629 pLX_304 0% 77.1% 76.2% V5 (many diffs) n/a
3 TRCN0000478105 CCCAGTGCAAACAATACCGTTGCG pLX_317 21.8% 77.1% 76.2% V5 (many diffs) n/a
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