Transcript: Human XM_011540546.2

PREDICTED: Homo sapiens glomulin, FKBP associated protein (GLMN), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GLMN (11146)
Length:
2807
CDS:
279..2063

Additional Resources:

NCBI RefSeq record:
XM_011540546.2
NBCI Gene record:
GLMN (11146)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011540546.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000006579 GTCCTGTTGTTCGATGCCTTT pLKO.1 478 CDS 100% 4.050 3.240 N GLMN n/a
2 TRCN0000352696 GTCCTGTTGTTCGATGCCTTT pLKO_005 478 CDS 100% 4.050 3.240 N GLMN n/a
3 TRCN0000011034 CCCTTTGCTGACAGCACAATT pLKO.1 932 CDS 100% 13.200 9.240 N GLMN n/a
4 TRCN0000337525 CCCTTTGCTGACAGCACAATT pLKO_005 932 CDS 100% 13.200 9.240 N Glmn n/a
5 TRCN0000342547 CCCTTTGCTGACAGCACAATT pLKO_005 932 CDS 100% 13.200 9.240 N GLMN n/a
6 TRCN0000006580 GATAGGATTATGGCTTCATTA pLKO.1 1683 CDS 100% 13.200 9.240 N GLMN n/a
7 TRCN0000342535 GATAGGATTATGGCTTCATTA pLKO_005 1683 CDS 100% 13.200 9.240 N GLMN n/a
8 TRCN0000012863 GCCACTTCATATAGGACTTAA pLKO.1 1799 CDS 100% 13.200 9.240 N Glmn n/a
9 TRCN0000006578 GCCTCCTGAAATGCAGCTTAA pLKO.1 1925 CDS 100% 10.800 7.560 N GLMN n/a
10 TRCN0000342546 GCCTCCTGAAATGCAGCTTAA pLKO_005 1925 CDS 100% 10.800 7.560 N GLMN n/a
11 TRCN0000006581 GAAACTTCATAACAAGGCATA pLKO.1 680 CDS 100% 4.050 2.835 N GLMN n/a
12 TRCN0000342534 GAAACTTCATAACAAGGCATA pLKO_005 680 CDS 100% 4.050 2.835 N GLMN n/a
13 TRCN0000012865 GCACATTATGAAGCAGAAATT pLKO.1 1830 CDS 100% 13.200 7.920 N Glmn n/a
14 TRCN0000337529 GCACATTATGAAGCAGAAATT pLKO_005 1830 CDS 100% 13.200 7.920 N Glmn n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011540546.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02629 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02629 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000478105 CCCAGTGCAAACAATACCGTTGCG pLX_317 21.8% 100% 100% V5 n/a
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