Construct: ORF TRCN0000478106

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015398.1_s317c1
Derived from:
ccsbBroadEn_07866
DNA Barcode:
TGATCCCTTCCATCACCAATCCGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC9A8 (23315)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478106
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23315 SLC9A8 solute carrier family 9 mem... NM_015266.3 99.9% 100% 975T>G
2 human 23315 SLC9A8 solute carrier family 9 mem... NM_001260491.1 97.2% 97.3% 532_579del;1023T>G
3 human 23315 SLC9A8 solute carrier family 9 mem... XM_006723756.1 94.5% 94.4% 714T>C;719_817del;1074T>G
4 human 23315 SLC9A8 solute carrier family 9 mem... XM_011528739.2 92.1% 90.7% (many diffs)
5 human 23315 SLC9A8 solute carrier family 9 mem... XM_011528736.2 92.1% 92% (many diffs)
6 human 23315 SLC9A8 solute carrier family 9 mem... XM_011528741.2 90.7% 90.7% 532_579del;1005_1006ins117
7 human 23315 SLC9A8 solute carrier family 9 mem... XM_011528737.1 87.6% 87.6% (many diffs)
8 human 23315 SLC9A8 solute carrier family 9 mem... XM_011528738.2 85.9% 85.8% (many diffs)
9 human 23315 SLC9A8 solute carrier family 9 mem... XM_011528740.2 80.8% 78.6% (many diffs)
10 human 23315 SLC9A8 solute carrier family 9 mem... XM_017027754.2 80.1% 78.9% (many diffs)
11 human 23315 SLC9A8 solute carrier family 9 mem... XM_011528742.1 58.8% 58.7% (many diffs)
12 human 23315 SLC9A8 solute carrier family 9 mem... XM_017027755.2 58.8% 58.7% (many diffs)
13 human 23315 SLC9A8 solute carrier family 9 mem... XM_011528743.2 57.4% 57.4% 0_1ins741;234T>G
14 human 23315 SLC9A8 solute carrier family 9 mem... XM_017027756.2 57.4% 57.4% 0_1ins741;234T>G
15 human 23315 SLC9A8 solute carrier family 9 mem... XM_011528744.2 51.6% 51.2% (many diffs)
16 human 23315 SLC9A8 solute carrier family 9 mem... XM_011528745.2 45% 41.3% (many diffs)
17 human 23315 SLC9A8 solute carrier family 9 mem... NR_048537.2 27.7% (many diffs)
18 human 23315 SLC9A8 solute carrier family 9 mem... NR_048538.2 26.4% (many diffs)
19 human 23315 SLC9A8 solute carrier family 9 mem... NR_048539.2 25.6% (many diffs)
20 human 23315 SLC9A8 solute carrier family 9 mem... NR_048540.2 22.8% (many diffs)
21 mouse 77031 Slc9a8 solute carrier family 9 (so... NM_148929.3 88% 95.6% (many diffs)
22 mouse 77031 Slc9a8 solute carrier family 9 (so... NM_001304542.1 83.8% 90.3% (many diffs)
23 mouse 77031 Slc9a8 solute carrier family 9 (so... XM_006500395.3 80.1% 87.2% (many diffs)
24 mouse 77031 Slc9a8 solute carrier family 9 (so... NM_001304540.1 74.3% 80.3% (many diffs)
25 mouse 77031 Slc9a8 solute carrier family 9 (so... XM_006500398.3 63.8% 64% (many diffs)
26 mouse 77031 Slc9a8 solute carrier family 9 (so... XM_006500399.1 55.7% 59.8% (many diffs)
27 mouse 77031 Slc9a8 solute carrier family 9 (so... XM_006500400.1 55.7% 59.8% (many diffs)
28 mouse 77031 Slc9a8 solute carrier family 9 (so... XR_001783205.1 31.6% (many diffs)
29 mouse 77031 Slc9a8 solute carrier family 9 (so... NR_130767.1 29% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1812
ORF length:
1743
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gggggagaag atggcggaag aggagaggtt ccccaataca actcatgagg
121gtttcaatgt caccctccac accaccctgg ttgtcacgac gaaactggtg ctcccgaccc
181ctggcaagcc catcctcccc gtgcagacag gggagcaggc ccagcaagag gagcagtcca
241gcggcatgac cattttcttc agcctccttg tcctagctat ctgcatcata ttggtgcatt
301tactgatccg atacagatta catttcttgc cagagagtgt tgctgttgtt tctttaggta
361ttctcatggg agcagttata aaaattatag agtttaaaaa actggcgaat tggaaggaag
421aagaaatgtt tcgtccaaac atgtttttcc tcctcctgct tccccctatt atctttgagt
481ctggatattc attacacaag ggtaacttct ttcaaaatat tggttccatc accctgtttg
541ctgtttttgg gacggcaatc tccgcttttg tagtaggtgg aggaatttat tttctgggtc
601aggctgatgt aatctctaaa ctcaacatga cagacagttt tgcgtttggc tccctaatat
661ctgctgtcga tccagtggcc actattgcca ttttcaatgc acttcatgtg gaccccgtgc
721tcaacatgct ggtctttgga gaaagtattc tcaacgatgc agtctccatt gttctgacca
781acacagctga aggtttaaca agaaaaaata tgtcagatgt cagtgggtgg caaacatttt
841tacaagccct tgactacttc ctcaaaatgt tctttggctc tgcagcgctc ggcactctca
901ctggcttaat ttctgcatta gtgctgaagc atattgactt gaggaaaacg ccttccttgg
961agtttggcat gatgatcatt tttgcttatc tgccttatgg gcttgcagaa ggaatctcac
1021tctcaggcat catggccatc ctgttctcag gcatcgtgat gtcccactac acgcaccata
1081acctctcccc agtcacccag atcctcatgc agcagaccct ccgcaccgtg gccttcttat
1141gtgaaacatg tgtgtttgca tttcttggcc tgtccatttt tagttttcct cacaagtttg
1201aaatttcctt tgtcatctgg tgcatagtgc ttgtactatt tggcagagcg gtaaacattt
1261tccctctttc ctacctcctg aatttcttcc gggatcataa aatcacaccg aagatgatgt
1321tcatcatgtg gtttagtggc ctgcggggag ccatccccta tgccctgagc ctacacctgg
1381acctggagcc catggagaag cggcagctca tcggcaccac caccatcgtc atcgtgctct
1441tcaccatcct gctgctgggc ggcagcacca tgcccctcat tcgcctcatg gacatcgagg
1501acgccaaggc acaccgcagg aacaagaagg acgtcaacct cagcaagacT GAGAAGATGG
1561GCAACACTGT GGAGTCGGAG CACCTGTCGG AGCTCACGGA GGAGGAGTAC GAGGCCCACT
1621ACATCAGGCG GCAGGACCTT AAGGGCTTCG TGTGGCTGGA CGCCAAGTAC CTGAACCCCT
1681TCTTCACTCG GAGGCTGACG CAGGAGGACC TGCACCACGG GCGCATCCAG ATGAAAACTC
1741TCACCAACAA GTGGTACGAG GAGGTACGCC AGGGCCCCTC CGGCTCCGAG GACGACGAGC
1801AGGAGCTGCT CTTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1861ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1921CGATTTCTTG GCTTTATATA TCTGTGGAAA GGACGATGAT CCCTTCCATC ACCAATCCGC
1981ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)