Construct: ORF TRCN0000478179

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004088.1_s317c1
Derived from:
ccsbBroadEn_14713
DNA Barcode:
ATTAACTCACTCCAACAAGGAAAG
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NFIX (4784)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478179
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4784 NFIX nuclear factor I X NM_001365982.2 65.3% 64% (many diffs)
2 human 4784 NFIX nuclear factor I X NM_001365985.2 59.9% 59.3% (many diffs)
3 human 4784 NFIX nuclear factor I X NM_002501.4 59.2% 58% (many diffs)
4 human 4784 NFIX nuclear factor I X NM_001271044.3 58.2% 57.5% (many diffs)
5 human 4784 NFIX nuclear factor I X XM_006722760.2 57% 55.1% (many diffs)
6 human 4784 NFIX nuclear factor I X NM_001365984.2 52.6% 52% (many diffs)
7 human 4784 NFIX nuclear factor I X NM_001365902.2 52% 50.9% (many diffs)
8 human 4784 NFIX nuclear factor I X NM_001271043.2 51.3% 49.7% (many diffs)
9 human 4784 NFIX nuclear factor I X XM_005259920.3 51.1% 50.4% (many diffs)
10 human 4784 NFIX nuclear factor I X XM_011528040.1 50.5% 49% (many diffs)
11 human 4784 NFIX nuclear factor I X XM_005259917.4 50.3% 48.6% (many diffs)
12 human 4784 NFIX nuclear factor I X NM_001365983.2 49.4% 48.8% (many diffs)
13 mouse 18032 Nfix nuclear factor I/X NM_010906.3 62.5% 64% (many diffs)
14 mouse 18032 Nfix nuclear factor I/X NM_001297601.1 61.5% 63.5% (many diffs)
15 mouse 18032 Nfix nuclear factor I/X NM_001081982.2 56.7% 58% (many diffs)
16 mouse 18032 Nfix nuclear factor I/X XM_006530761.3 49.8% 50.9% (many diffs)
17 mouse 18032 Nfix nuclear factor I/X XM_006530762.3 49.4% 50.4% (many diffs)
18 mouse 18032 Nfix nuclear factor I/X XM_006530763.3 49.1% 49.9% (many diffs)
19 mouse 18032 Nfix nuclear factor I/X NM_001081981.2 48.9% 50.4% (many diffs)
20 mouse 18032 Nfix nuclear factor I/X XM_011248326.2 46% 47.1% (many diffs)
21 mouse 18032 Nfix nuclear factor I/X XM_006530760.3 45.9% 47% (many diffs)
22 mouse 18032 Nfix nuclear factor I/X XM_006530759.3 42.7% 43.7% (many diffs)
23 mouse 18032 Nfix nuclear factor I/X XM_006530758.3 41.3% 42.3% (many diffs)
24 mouse 18032 Nfix nuclear factor I/X XM_006530757.3 41.2% 42.2% (many diffs)
25 mouse 18032 Nfix nuclear factor I/X XM_006530756.3 38.7% 39.6% (many diffs)
26 mouse 18032 Nfix nuclear factor I/X XM_006530755.3 38.6% 39.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
864
ORF length:
795
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gctcccggct tgccgcctgc aggatgagtt ccacccgttc atcgaggcac
121tgctgcctca cgtccgcgct ttctcctaca cctggttcaa cctgcaggcg cggaagcgca
181agtacttcaa gaagcatgaa aagcggatgt cgaaggacga ggagcgggcg gtgaaggacg
241agctgctggg cgagaagccc gagatcaagc agaagtgggc atcccggctg ctggccaagc
301tgcgcaagga catccggccc gagttccgcg aggacttcgt gctgaccatc acgggcaaga
361agcccccctg ctgcgtgctc tccaaccccg accagaaggg caagatccgg cggattgact
421gcctgcgcca ggctgacaag gtgtggcggc tggacctggt catggtgatt ttgtttaagg
481ggatccccct ggaaagtact gatggggagc ggctctacaa gtcgcctcag tgctcgaacc
541ccggcctgtg cgtccagcca catcacattG GAGTCACAAT CAAAGAACTG GATCTTTATC
601TGGCTTACTT TGTCCACACT CCGGAATCCG GACAATCAGA TAGTTCAAAC CAGCAAGGAG
661ATGCGGACAT CAAACCACTG CCCAACGGGC ACTTAAGTTT CCAGGACTGT TTTGTGACTT
721CCGGGGTCTG GAATGTGACG GAGCTGGTGA GAGTATCACA GACTCCTGTT GCAACAGCAT
781CAGGGCCCAA CTTCTCCCTG GCGGACCTGG AGAGTCCCAG CTACTACAAC ATCAACCAGG
841TGACCCCGGG ACGGCAACTT TCTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA
901GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT
961TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAAT TAACTCACTC
1021CAACAAGGAA AGACGCGTTA AGTCgacaat caacctctgg attacaaaat ttgtgaaaga
1081tt

Download FASTA (ORF) (Full)