Construct: ORF TRCN0000478189

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008128.1_s317c1
Derived from:
ccsbBroadEn_01252
DNA Barcode:
GGCAGTTCATAACCTTCGCACTTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPIA (5478)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478189
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5478 PPIA peptidylprolyl isomerase A NM_021130.5 100% 100%
2 human 729739 PPIAP46 peptidylprolyl isomerase A ... NR_045207.1 93.5% (many diffs)
3 human 653598 PPIAL4C peptidylprolyl isomerase A ... NM_001135789.3 91.9% 86% (many diffs)
4 human 653505 PPIAL4A peptidylprolyl isomerase A ... NM_001143883.3 91.5% 85.4% (many diffs)
5 human 644591 PPIAL4G peptidylprolyl isomerase A ... NM_001123068.1 91.3% 84.2% (many diffs)
6 human 105371242 PPIAL4H peptidylprolyl isomerase A ... NM_001368128.1 91.1% 84.2% (many diffs)
7 human 730262 PPIAL4E peptidylprolyl isomerase A ... NM_001144032.2 90.9% 84.2% (many diffs)
8 human 728945 PPIAL4F peptidylprolyl isomerase A ... NM_001164262.2 90.9% 84.2% (many diffs)
9 human 645142 PPIAL4D peptidylprolyl isomerase A ... NM_001164261.1 90.7% 83.6% (many diffs)
10 human 5478 PPIA peptidylprolyl isomerase A XM_024446808.1 89% 81.7% (many diffs)
11 human 100192204 PPIAP30 peptidylprolyl isomerase A ... NR_036506.1 71.2% (many diffs)
12 human 5478 PPIA peptidylprolyl isomerase A NM_001300981.2 63.6% 63.6% 0_1ins180
13 human 5478 PPIA peptidylprolyl isomerase A XM_024446809.1 63.6% 63.6% 0_1ins180
14 human 5478 PPIA peptidylprolyl isomerase A XR_002956460.1 29% 1_765del;952_1172del;1482_1704del
15 human 284996 RNF149 ring finger protein 149 XR_001738713.2 16.5% (many diffs)
16 mouse 268373 Ppia peptidylprolyl isomerase A NM_008907.1 91.9% 95.7% (many diffs)
17 mouse 668548 Gm9234 predicted pseudogene 9234 XR_869917.3 60.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
561
ORF length:
495
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt caaccccacc gtgttcttcg acattgccgt cgacggcgag cccttgggcc
121gcgtctcctt tgagctgttt gcagacaagg tcccaaagac agcagaaaat tttcgtgctc
181tgagcactgg agagaaagga tttggttata agggttcctg ctttcacaga attattccag
241ggtttatgtg tcagggtggt gacttcacac gccataatgg cactggtggc aagtccatct
301atggggagaa atttgaagat gagaacttca tccTAAAGCA TACGGGTCCT GGCATCTTGT
361CCATGGCAAA TGCTGGACCC AACACAAATG GTTCCCAGTT TTTCATCTGC ACTGCCAAGA
421CTGAGTGGTT GGATGGCAAG CATGTGGTGT TTGGCAAAGT GAAAGAAGGC ATGAATATTG
481TGGAGGCCAT GGAGCGCTTT GGGTCCAGGA ATGGCAAGAC CAGCAAGAAG ATCACCATTG
541CTGACTGTGG ACAACTCGAA TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
601CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
661AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAGGCA GTTCATAACC
721TTCGCACTTT ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)

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