Construct: ORF TRCN0000478264

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009979.1_s317c1
Derived from:
ccsbBroadEn_12750
DNA Barcode:
ATTATTTTCCTTCCACATTTACAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZMIZ2 (83637)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478264
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83637 ZMIZ2 zinc finger MIZ-type contai... NM_001300959.1 100% 100%
2 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249873.2 97% 97% 897_974del
3 human 83637 ZMIZ2 zinc finger MIZ-type contai... NM_174929.2 96.4% 96.4% 163_258del
4 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249872.2 96.4% 96.4% 163_258del
5 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249871.2 96% 96% 897_974del;1144_1170del
6 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249870.2 95.4% 95.4% 163_258del;1162_1188del
7 human 83637 ZMIZ2 zinc finger MIZ-type contai... NM_031449.4 93.6% 93.6% 163_258del;993_1070del
8 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249869.2 93.6% 93.6% 163_258del;993_1070del
9 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249866.2 92.7% 92.7% 163_258del;993_1070del;1240_1266del
10 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249867.5 92.7% 92.7% 163_258del;993_1070del;1240_1266del
11 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249868.4 92.7% 92.7% 163_258del;993_1070del;1240_1266del
12 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_017012674.1 92.7% 92.7% 163_258del;993_1070del;1240_1266del
13 human 83637 ZMIZ2 zinc finger MIZ-type contai... XR_926950.1 85% (many diffs)
14 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_011515566.1 70.6% 67% (many diffs)
15 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_011243735.2 87.8% 90.6% (many diffs)
16 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_017314664.1 85.8% 87.7% (many diffs)
17 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... NM_001005867.1 85.2% 88% (many diffs)
18 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_011243733.2 84.7% 87.3% (many diffs)
19 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_011243734.2 82.8% 84.5% (many diffs)
20 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... NM_028601.3 82.3% 85% (many diffs)
21 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_006514748.2 82.3% 85% (many diffs)
22 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_006514750.3 82.3% 85% (many diffs)
23 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_011243732.1 82.3% 85% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2655
ORF length:
2586
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaactccatg aaccccatga aacctgccct gccccctgcg ccacacggtg
121atggttcatt cgcatatgag tctgtgcctt ggcaacaaag cgccactcag ccggctggat
181cgctgtctgt ggtcactact gtgtggggag ttggcaacgc gacacagagc cagtgcctgg
241gacagcaggc gtttgctgaa ggcggcgcca acaagggcta cgtgcagcaa ggcgtgtaca
301gccgcggggg ctaccctggg gcccccggct tcaccaccgg gtatgcaggc ggcccggggg
361gcctgggcct cccctcacat gctgcaagac cctccactga cttcacgcaa gcggcagctg
421ctgcagctgt ggctgctgcg gcagccactg ccaccgccac agccacagcc accgtggctg
481ctctccagga gaagcagagc caggagctga gccagtatgg agcgatgggg gccggacagt
541cttttaacag ccagtttctg cagcatggag gtccccgggg gcctagtgtc cccgctggca
601tgaaccctac tggcatagga ggggtaatgg gcccctctgg cctctccccc ttggctatga
661accccacccg ggcagcagga atgacaccct tgtatgcagg gcagcgtctg ccccaacatg
721ggtatcctgg gcctccccag gcccagccac tgccccgaca gggggtcaag agaacctact
781ctgaggtgta tccagggcag cagtatctgc aaggaggcca gtatgcaccc agcaccgccc
841agtttgcgcc cagccctggg cagccccctg ccccctcccc ttcctaccct gggcacaggc
901tgcccctgca gcagggcatg acccagtccc tgtccgtgcc tggccccacg ggactgcatt
961ataagcctac ccgttccatc ccgggctatc ccagttcccc actgccaggg aaccccacgc
1021cacccatgac cccaagcagc agcgtccctt acatgtcacc aaaccaagag gtcaagtctc
1081ccttcttgcc tgatctcaag cccaacctca actccttgca ctcatcgccc tctggaagcg
1141ggccttgtga cgagttgcgg ctgaccttcc ctgtgcgcga tggggtggtc ctggagccct
1201tccgcctgca gcacaacctg gctgtaagca accatgtctt ccagctgcga gactcagtct
1261acaagaccct gataatgagg cctgacctgg agctgcaatt caagtgctac caccacgagg
1321accggcagat gaacaccaac tggccagcct cggtgcaggt cagcgtcaat gccacgccgc
1381tcaccatcga gcgtggcgac aacaagacct cgcacaagcc actctacctg aagcatgtgt
1441gccagccagg ccgcaacacc atccagatca ccgtcaccgc ctgctgctgc tcccacctct
1501tcgtgctgca gctagtgcac cgcccatccg tccgctcggt gctgcagggc ctcctcaaaa
1561agcgcctcct gcctgctgag cactgcatca ccaagataaa gcggaacttc agcagcggca
1621ccatccctgg cacccctggg cccaacggag aggacggggt ggagcagaca gctatcaagg
1681tgtccctgaa gtgccccatc accttccgca ggatccagct ccctgcccga ggtcatgact
1741gtcgccacat acagtgcttt gacctggagt cgtacctgca gctcaactgt gagcggggga
1801cttggaggtg tcctgtgtgc aacaagacag ctttgctgga gggcctggag gtggaccagt
1861acatgctggg catcctgatt tacattcaga actctgacta tgaggagatc accatcgacc
1921ccacgtgcag ctggaagcca gtgcccgtga agcctgacat gcacatcaag gaggagccgg
1981atgggccagc actgaagcgc tgccgcaccg tgagccccgc ccacgtgctc atgcccagcg
2041tgatggagat gatcgccgcc ctgggccccg gcgctgcccc ctttgccccc ctgcagcccc
2101cctcagtccc tgcccccagc gactaccctg gccagggttc cagcttcctg gggcctggaa
2161ctttccctga gtccttccca cccaccacgc ccagcacccc aacccttgct gagttcaccc
2221cgggaccacc ccccatctcc taccagtctg acattcccag cagcctcctg acttcagaga
2281agtctaccgc ctgcctccca agccagatgg caccagcagg tcacctggac cccactcaca
2341atccTGGGAC ACCAGGACTA CACACCTCCA ACCTTGGGGC CCCTCCAGGT CCCCAGCTGC
2401ACCATTCAAA CCCTCCCCCA GCGTCCCGGC AGTCCTTGGG CCAAGCGAGC TTAGGACCTA
2461CGGGTGAACT GGCCTTCAGT CCTGCCACAG GCGTGATGGG GCCCCCCAGC ATGTCTGGAG
2521CCGGGGAGGC CCCAGAACCA GCTCTGGACC TGCTCCCGGA ACTGACCAAC CCTGATGAGC
2581TACTGTCCTA CTTGGGCCCA CCCGACCTCC CTACGAACAA CAATGACGAC CTGCTTTCTC
2641TGTTTGAGAA CAACTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
2701CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
2761TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA ATTATTTTCC TTCCACATTT
2821ACATACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)