Construct: ORF TRCN0000478265

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015909.1_s317c1
Derived from:
ccsbBroadEn_08714
DNA Barcode:
GCACACGGTGTACATGGGCGCGGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PELI1 (57162)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478265
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57162 PELI1 pellino E3 ubiquitin protei... NM_020651.4 99.8% 100% 243A>G;291C>A
2 human 57162 PELI1 pellino E3 ubiquitin protei... XM_011532994.3 99.8% 100% 243A>G;291C>A
3 human 57162 PELI1 pellino E3 ubiquitin protei... XM_017004520.1 99.8% 100% 243A>G;291C>A
4 human 57162 PELI1 pellino E3 ubiquitin protei... XM_017004521.2 83.9% 83.9% (many diffs)
5 human 57162 PELI1 pellino E3 ubiquitin protei... XM_005264437.3 76.5% 76.5% 0_1ins294
6 human 57162 PELI1 pellino E3 ubiquitin protei... XM_011532996.2 76.5% 76.5% 0_1ins294
7 human 57162 PELI1 pellino E3 ubiquitin protei... XM_011532997.2 57.1% 57.1% 0_1ins537
8 mouse 67245 Peli1 pellino 1 NM_023324.2 92.8% 99.7% (many diffs)
9 mouse 67245 Peli1 pellino 1 XM_011243746.1 78.4% 84.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1320
ORF length:
1254
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt ttctcctgat caagaaaatc atccatctaa agcaccagta aaatatggtg
121aactcattgt cttagggtat aatgggtctc tcccaaatgg cgatagagga aggaggaaaa
181gtaggtttgc tttgtttaaa agacctaagg caaatggggt gaagcccagc actgtgcata
241ttgcttgtac tcctcaggct gcaaaggcaa taagcaacaa agaccagcat agcatatcat
301atactttgtc tcgggcccag actgtggtgg ttgaatatac tcatgacagc aacacagata
361tgtttcagat tggccggtcg actgaaagcc ccattgattt tgtagtaact gacacggttc
421ctggaagtca aagtaattct gatacacagt cagtacaaag cactatatca agatttgcct
481gcagaatcat atgtgaacgg aatcctccct ttacagcacg gatttatgct gcaggatttg
541actcatcaaa aaacatcttt cttggggaga aggctgccaa atggaagaca tcagatggac
601agatggatgg cttgaccact aatggtgttc ttgtgatgca tccacgcaat gggttcacag
661aagactccaa gcctggaata tggagagaaa tatcggtgtg tggaaatgta tttagcctac
721gtgaaaccag atcggctcag cagagaggaa aaatggtgga aattgaaacc aatcagttac
781aagatggctc gttaattgac ctctgtggtg caacattgtt atggcgtact gcagaaggcc
841tttcccacac tcctaccgtg aagcatttag aagctttaag acaggaaatc aatgcagcac
901gacctcagtg ccctgtaggg ttcaacacac tagcatttcc tagtatgaag aggaaagacg
961ttgtagatga aaaacaacca tgggtatatc taaactgcgg ccatgtacat ggctatcata
1021actggggaaa caaagaagaa cgtgatggaa aagatcgtga atgtcctatg tgtaggtctg
1081ttggtcccta tgttcctctg tggcttGGAT GTGAAGCTGG ATTTTATGTG GACGCCGGCC
1141CTCCAACCCA TGCGTTTAGC CCGTGTGGGC ATGTGTGTTC AGAAAAGACA ACTGCCTATT
1201GGTCCCAGAT CCCACTTCCT CATGGTACTC ATACTTTTCA TGCAGCCTGT CCCTTTTGTG
1261CACATCAGTT GGCTGGTGAA CAAGGCTACA TCAGACTTAT TTTTCAAGGA CCTCTAGACT
1321ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1381GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1441TTTATATATC TTGTGGAAAG GACGAGCACA CGGTGTACAT GGGCGCGGAA CGCGTTAAGT
1501Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)