Construct: ORF TRCN0000478302

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010998.1_s317c1
Derived from:
ccsbBroadEn_08522
DNA Barcode:
CATATGCGTTCGCTCCAACCTGTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYNJ2BP (55333)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478302
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55333 SYNJ2BP synaptojanin 2 binding protein NM_018373.3 99.7% 100% 424C>A
2 human 100529257 SYNJ2BP-COX16 SYNJ2BP-COX16 readthrough NM_001202549.2 75.4% 52.3% (many diffs)
3 human 100529257 SYNJ2BP-COX16 SYNJ2BP-COX16 readthrough NM_001202547.2 72.5% 69.1% (many diffs)
4 human 100529257 SYNJ2BP-COX16 SYNJ2BP-COX16 readthrough NM_001202548.2 62.8% 50.4% (many diffs)
5 mouse 24071 Synj2bp synaptojanin 2 binding protein NM_025292.7 89.1% 91% (many diffs)
6 mouse 105940408 Gm20498 predicted gene 20498 NM_001309848.1 71.5% 57.5% (many diffs)
7 mouse 24071 Synj2bp synaptojanin 2 binding protein NM_001309814.1 71.2% 60% (many diffs)
8 mouse 105940408 Gm20498 predicted gene 20498 NM_001309847.1 61.9% 49.5% (many diffs)
9 mouse 24071 Synj2bp synaptojanin 2 binding protein NR_132136.1 2.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
501
ORF length:
435
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa cggaagagtg gattatttgg tcactgagga agagatcaat cttaccagag
121ggccctcagg gctgggcttc aacatcgtcg gtgggacaga tcagcagtat gtctccaacg
181acagtggcat cTACGTCAGC CGCATCAAAG AAAATGGGGC TGCGGCCCTG GATGGGCGGC
241TCCAGGAGGG TGATAAGATC CTTTCGGTAA ATGGCCAAGA CCTAAAGAAC CTGCTGCACC
301AGGATGCTGT AGACCTCTTT CGTAATGCAG GCTATGCTGT GTCTCTGAGA GTGCAGCACA
361GGTTACAGGT GCAGAATGGA CCTATAGGAC ATCGAGGTGA AGGGGACCCA AGTGGTATTC
421CCATATTTAT GGTGCTGGTG CCAGTGTTTG CCCTCACCAT GGTAGCAGCC TGGGCTTTCA
481TGAGATACAG GCAACAACTT TGCCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
541CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
601AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACATA TGCGTTCGCT
661CCAACCTGTC ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)

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