Construct: ORF TRCN0000478467

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018378.1_s317c1
Derived from:
ccsbBroadEn_12427
DNA Barcode:
TCTGTTTAATGATTCCTATCTCTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AGBL5 (60509)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478467
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 60509 AGBL5 ATP/GTP binding protein like 5 XM_005264477.3 86.2% 84.2% (many diffs)
2 human 60509 AGBL5 ATP/GTP binding protein like 5 NM_021831.6 78.5% 78.1% 1_276del;2352_2353ins47;2402_2658del
3 human 60509 AGBL5 ATP/GTP binding protein like 5 XM_011533011.3 78.5% 78.1% 1_276del;2352_2353ins47;2402_2658del
4 human 60509 AGBL5 ATP/GTP binding protein like 5 XM_011533012.2 78.5% 78.1% 1_276del;2352_2353ins47;2402_2658del
5 human 60509 AGBL5 ATP/GTP binding protein like 5 XM_011533013.2 78.5% 78.1% 1_276del;2352_2353ins47;2402_2658del
6 human 60509 AGBL5 ATP/GTP binding protein like 5 NM_001035507.3 74.7% 74.8% (many diffs)
7 human 60509 AGBL5 ATP/GTP binding protein like 5 NR_104246.2 67.1% 1_448del;2621_3235del
8 human 60509 AGBL5 ATP/GTP binding protein like 5 NR_138023.1 66.5% 1_454del;2627_3262del
9 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 NM_001048192.2 75% 75.5% (many diffs)
10 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 NM_001294262.1 70.5% 71.6% (many diffs)
11 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 XM_006503873.3 69.8% 70.2% (many diffs)
12 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 XM_006503875.1 68.7% 70% (many diffs)
13 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 XM_006503876.1 68.7% 70% (many diffs)
14 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 XM_006503877.1 68.7% 70% (many diffs)
15 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 XM_006503874.3 68% 67.2% (many diffs)
16 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 XM_006503868.3 67.6% 68.1% (many diffs)
17 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 NM_174849.3 67.4% 65.9% (many diffs)
18 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 XM_006503870.1 66.6% 67.7% (many diffs)
19 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 XM_006503871.1 66.6% 67.7% (many diffs)
20 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 XM_006503872.1 66.6% 67.7% (many diffs)
21 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 XM_006503869.3 65.9% 65.2% (many diffs)
22 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 XM_006503867.3 62.4% 63.4% (many diffs)
23 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 XM_006503866.3 60.6% 61.6% (many diffs)
24 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 NR_122117.1 58.1% (many diffs)
25 mouse 231093 Agbl5 ATP/GTP binding protein-like 5 NR_122116.1 56.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2238
ORF length:
2172
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa catgaacaag cagagcaagc tgtattccca gggcatggcc ccctttgtgc
121gcacactgcc cacccggcca cgctgggaac gcattcgaga ccggcccacc tttgagatga
181cagagacgca gtttgtgtta tcctttgttc atcgtttcgt ggagggccgt ggggccacca
241ccttcttcgc cttctgctac cccttctcct acagtgactg ccaggaactg ctaaaccagc
301tagaccagcg ctttccggag aaccacccta cccatagcag ccccctggat accatctatt
361accatcggga gctcctttgc tattctctgg atggacttcg tgtagatctg ctgacgatca
421cttcctgcca tgggcttcga gaagatcgag agccccgtct agagcagcta tttcctgata
481ccagcacccc tcgaccattc cgtttcgcag gcaagaggat attcttctta agcagtagag
541tacacccagg ggagactcca tctagctttg tcttcaatgg ctttctggac ttcatcctcc
601gacctgatga tccccgggcc caaaccctcc gtcgcctctt cgtctttaag ctgattccca
661tgttgaaccc cgatggtgtg gtccggggac actaccgcac agactcacgt ggagtgaatc
721tgaaccgtca gtacctgaag cctgatgccg tcctgcaccc ggccatctat ggggccaaag
781ctgtgcttct ctaccaccat gtgcactctc gtctgaactc ccagagttcc tctgagcacc
841agcccagttc ctgtctccct cctgatgctc ctgtttctga cctggagaaa gccaacaatc
901tccaaaatga agctcagtgt gggcactcag ctgacaggca taacgctgaa gcctggaaac
961aaacagagcc agcagaacag aagctcaaca gtgtgtggat tatgccacaa cagtctgcgg
1021ggcttgaaga gtcagcccct gataccatcc cccccaaaga gagtggcgtt gcttactatg
1081tggacctgca tggacatgct tccaaaaggg gctgcttcat gtacggaaac agctttagtg
1141atgagagcac ccaggtggaa aacatgctat atccaaagct catctccttg aattcagccc
1201acttcgactt ccagggctgc aatttctcag agaagaatat gtatgcccga gaccgtagag
1261atggccagtc taaagaggga agcggccgtg ttgcaatcta caaagcctca gggataatcc
1321acagctacac acttgaatgc aactacaaca ctggacgctc agtaaacagc atccctgctg
1381cctgccatga caatgggcgt gccagccccc ctcccccgcc ggctttcccc tccagataca
1441ctgtggaact atttgagcag gtgggacgag ctatggccat tgcagccctg gacatggcgg
1501aatgtaatcc gtggccccga attgtactgt cagagcacag cagccttact aatctacggg
1561cctggatgct gaaacatgta cgcaacagcc gaggcctaag cagcactctg aatgtgggtg
1621tcaacaagaa gaggggcctt cgaactccac ccaaaagtca caatgggttg cctgtctcct
1681gctccgaaaa caccttgagt cgggcacgaa gttttagcac cggcacaagt gccggtggta
1741gcagcagcag ccaacaaaat tctccacaga tgaagaattc ccccagcttt ccttttcatg
1801gcagtcggcc tgcagggctg ccaggcctgg gctctagtac ccaaaaggtc acccaccggg
1861tgctgggccc cgtcagagag ccccgaagcc aggacaggag acggcagcag cagcccctga
1921accatcgtcc TGCAGGCAGC CTCGCTCCAT CCCCAGCTCC TACTAGTTCT GGCCCAGCCT
1981CCTCACACAA GCTGGGCTCC TGTCTACTGC CTGATTCATT CAACATACCA GGGAGCAGTT
2041GCTCACTCTT GTCCTCTGGA GACAAACCAG AGGCTGTCAT GGTAATCGGG AAAGGTCTGC
2101TAGGGACTGG AGCTCGGATG CCCTGCATCA AGACTCGATT GCAGACCTGT CCGAGGAGAG
2161TTTCCGCCAG GAGGGGTCCC GGATTCCCCA GGCTAGGCCC AGGTTGGGCC GGGGCTCACC
2221GCCGACTCGC AGAGGGATGC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
2281TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
2341GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATCTGTTT AATGATTCCT
2401ATCTCTCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)

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