Construct: ORF TRCN0000478594

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018234.1_s317c1
Derived from:
ccsbBroadEn_00560
DNA Barcode:
TCCGATACATCGCTTTAATTTGAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FGF14 (2259)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478594
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2259 FGF14 fibroblast growth factor 14 NM_175929.2 100% 100%
2 human 2259 FGF14 fibroblast growth factor 14 NM_001321939.1 85.3% 84.9% 208_209ins111
3 human 2259 FGF14 fibroblast growth factor 14 NM_001321945.2 84.5% 84.5% 0_1ins117
4 human 2259 FGF14 fibroblast growth factor 14 NM_001321948.2 84.5% 84.5% 0_1ins117
5 human 2259 FGF14 fibroblast growth factor 14 NM_001321947.2 79.3% 79.3% 0_1ins156
6 human 2259 FGF14 fibroblast growth factor 14 NM_004115.3 76.8% 71.2% (many diffs)
7 human 2259 FGF14 fibroblast growth factor 14 NM_001321933.1 74.2% 72.6% (many diffs)
8 human 2259 FGF14 fibroblast growth factor 14 NM_001321938.2 74.2% 72.6% (many diffs)
9 human 2259 FGF14 fibroblast growth factor 14 NM_001321940.1 74.2% 72.6% (many diffs)
10 human 2259 FGF14 fibroblast growth factor 14 NM_001321941.1 72.8% 73% 0_1ins203;2_3delTG;6A>T
11 human 2259 FGF14 fibroblast growth factor 14 NM_001321932.1 72.6% 72.2% 1_1delAins206;4delC
12 human 2259 FGF14 fibroblast growth factor 14 NM_001321936.1 72.6% 72.2% 1_1delAins206;4delC
13 human 2259 FGF14 fibroblast growth factor 14 NM_001321944.1 72.6% 72.2% 1_1delAins206;4delC
14 human 2259 FGF14 fibroblast growth factor 14 NM_001321931.1 64.6% 64.6% 0_1ins267
15 human 2259 FGF14 fibroblast growth factor 14 NM_001321934.1 64.6% 64.6% 0_1ins267
16 human 2259 FGF14 fibroblast growth factor 14 NM_001321935.1 64.6% 64.6% 0_1ins267
17 human 2259 FGF14 fibroblast growth factor 14 NM_001321942.1 64.6% 64.6% 0_1ins267
18 human 2259 FGF14 fibroblast growth factor 14 NM_001321943.1 64.6% 64.6% 0_1ins267
19 human 2259 FGF14 fibroblast growth factor 14 NM_001321946.2 64.6% 64.6% 0_1ins267
20 human 2259 FGF14 fibroblast growth factor 14 NM_001321949.1 64.6% 64.6% 0_1ins267
21 human 2259 FGF14 fibroblast growth factor 14 NM_001321937.1 60% 57.5% (many diffs)
22 mouse 14169 Fgf14 fibroblast growth factor 14 NM_207667.3 95.5% 98% (many diffs)
23 mouse 14169 Fgf14 fibroblast growth factor 14 XM_017315845.2 75.3% 78.1% (many diffs)
24 mouse 14169 Fgf14 fibroblast growth factor 14 NM_010201.4 71.5% 70.1% (many diffs)
25 mouse 14169 Fgf14 fibroblast growth factor 14 XM_011244952.3 60.9% 63.4% (many diffs)
26 mouse 14169 Fgf14 fibroblast growth factor 14 XM_006518549.4 59.1% 56% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
825
ORF length:
756
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggtaaaaccg gtgcccctct tcaggagaac tgatttcaaa ttattattat
121gcaaccacaa ggatctcttc tttctcaggg tgtctaagct gctggattgc ttttcgccca
181aatcaatgtg gtttctttgg aacattttca gcaaaggaac gcatatgctg cagtgtcttt
241gtggcaagag tcttaagaaa aacaagaacc caactgatcc ccagctcaag ggtatagtga
301ccaggttata ttgcaggcaa ggctactact tgcaaatgca ccccgatgga gctctcgatg
361gaaccaagga tgacagcact aattctacac tcttcaacct cataccagtg ggactacgtg
421ttgttgccat ccagggagtg aaaacagggt tgtatatagc catGAATGGA GAAGGTTACC
481TCTACCCATC AGAACTTTTT ACCCCTGAAT GCAAGTTTAA AGAATCTGTT TTTGAAAATT
541ATTATGTAAT CTACTCATCC ATGTTGTACA GACAACAGGA ATCTGGTAGA GCCTGGTTTT
601TGGGATTAAA TAAGGAAGGG CAAGCTATGA AAGGGAACAG AGTAAAGAAA ACCAAACCAG
661CAGCTCATTT TCTACCCAAG CCATTGGAAG TTGCCATGTA CCGAGAACCA TCTTTGCATG
721ATGTTGGGGA AACGGTCCCG AAGCCTGGGG TGACGCCAAG TAAAAGCACA AGTGCGTCTG
781CAATAATGAA TGGAGGCAAA CCAGTCAACA AGAGTAAGAC AACATTGCCA ACTTTCTTGT
841ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
901AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
961GAAAGGACGA TCCGATACAT CGCTTTAATT TGACACGCGT TAAGTCgaca atcaacctct
1021ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)

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