Construct: ORF TRCN0000478625
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006681.1_s317c1
- Derived from:
- ccsbBroadEn_03684
- DNA Barcode:
- GCTCCAATGTTGAAGCTCCTAGTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZMAT5 (55954)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478625
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55954 | ZMAT5 | zinc finger matrin-type 5 | NM_001003692.2 | 100% | 100% | |
| 2 | human | 55954 | ZMAT5 | zinc finger matrin-type 5 | NM_001318129.1 | 100% | 100% | |
| 3 | human | 55954 | ZMAT5 | zinc finger matrin-type 5 | NM_019103.2 | 100% | 100% | |
| 4 | mouse | 67178 | Zmat5 | zinc finger, matrin type 5 | NM_026015.2 | 90.7% | 92.9% | (many diffs) |
| 5 | mouse | 67178 | Zmat5 | zinc finger, matrin type 5 | XM_006514786.1 | 90.7% | 92.9% | (many diffs) |
| 6 | mouse | 67178 | Zmat5 | zinc finger, matrin type 5 | XM_006514787.1 | 90.7% | 92.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 576
- ORF length:
- 510
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggg gaagcgatac ttctgtgact actgcgaccg ctccttccag gacaacctcc 121 acaaccgcaa gaagcacctg aacgggctgc agcacctcaa ggccaagaag gtctggtacg 181 acatgttccg agatgcagct gccatcttgc tggatgagca gaacaagcgg cccTGCAGGA 241 AGTTTCTACT GACAGGCCAG TGCGACTTTG GCTCCAACTG CAGATTTTCC CACATGTCAG 301 AGCGAGACCT GCAGGAGCTG AGCATCCAGG TGGAGGAGGA GAGGCGAGCC AGGGAGTGGC 361 TACTAGATGC TCCTGAGCTC CCCGAGGGCC ATCTGGAGGA CTGGCTGGAG AAGAGAGCCA 421 AGCGGCTGAG CTCAGCCCCA AGTAGCAGGG CTGAACCCAT CAGAACCACT GTCTTCCAGT 481 ACCCCGTGGG CTGGCCACCA GTTCAGGAGC TGCCTCCATC CCTGCGGGCA CCCCCACCTG 541 GGGGGTGGCC TCTGCAGCCC AGAGTCCAGT GGGGCTGCCC AACTTTCTTG TACAAAGTGG 601 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 661 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 721 AGCTCCAATG TTGAAGCTCC TAGTCACGCG TTAAGTCgac aatcaacctc tggattacaa 781 aatttgtgaa agatt