Construct: ORF TRCN0000478640

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001369.1_s317c1
Derived from:
ccsbBroadEn_07038
DNA Barcode:
TACATCAATAACCCCTTTTATCCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF354A (6940)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478640
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6940 ZNF354A zinc finger protein 354A NM_005649.3 99.8% 99.8% 768T>C;897A>C
2 human 6940 ZNF354A zinc finger protein 354A XM_017009791.1 99.8% 99.8% 768T>C;897A>C
3 human 6940 ZNF354A zinc finger protein 354A NM_001324339.2 92.9% 92.8% 0_1ins126;642T>C;771A>C
4 human 6940 ZNF354A zinc finger protein 354A XM_011534645.2 92.9% 92.8% 0_1ins126;642T>C;771A>C
5 human 117608 ZNF354B zinc finger protein 354B NM_058230.3 88.8% 84.8% (many diffs)
6 mouse 21408 Zfp354a zinc finger protein 354A NM_009329.4 81.4% 82.6% (many diffs)
7 mouse 21408 Zfp354a zinc finger protein 354A XM_006532790.1 81.4% 82.6% (many diffs)
8 mouse 21408 Zfp354a zinc finger protein 354A NM_001347495.1 81.2% 82.5% (many diffs)
9 mouse 21408 Zfp354a zinc finger protein 354A XM_006532789.1 81.2% 82.5% (many diffs)
10 mouse 21408 Zfp354a zinc finger protein 354A NM_001326566.1 80.9% 81.8% (many diffs)
11 mouse 21408 Zfp354a zinc finger protein 354A XM_011248885.1 80.8% 81.7% (many diffs)
12 mouse 21408 Zfp354a zinc finger protein 354A XM_011248886.1 80.8% 81.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1881
ORF length:
1815
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tgctgggcag cgggaagcga ggccccaggt gtcactgacg tttgaggatg
121tggctgtgct gtttacccga gatgagtgga gaaagctggc cccttctcag agaaacttgt
181accgggatgt gatgctggag aactatagga acctggtctc actggggctc ccatttacca
241aaccaaaagt gatctccctg ttgcagcaag gagaagatcc ctgggaggtg gagaaagacg
301gttctggcgt ctcctctcta ggatcgaaga gcagtcataa aaccacaaag tcaacgcaaa
361cacaagactc ttcatttcag ggactgatac tgaaaagatc caacaggaat gtaccttggg
421atttgaaatt agaaaagcct tacatatatg aaggcagatt agagaaaaag caggataaaa
481agggaagttt tcagatagtt tcagccaccc acaaaaaaat ccccactata gaaagaagcc
541ataaaaatac tgaattgagc caaaacttca gcccaaagtc agtgcttatt aggcaacaga
601tacttcccag agaaaaaaca ccaccaaaat gtgaaataca aggaaacagc ctcaaacaga
661attcacaatt acttaatcaa ccaaaaatta cagcagataa acgctataaa tgtagtctgt
721gtgaaaaaac cttcattaac acttcatccc ttcgtaaaca tgagaaaaac catagtggag
781agaaactatt taagtgtaaa gaatgttcaa aagcctttag ccaaagttca gcccttattc
841aacatcaaat aacgcatact ggagagaaac cctacatatg taaagaatgt gggaaagcct
901ttactctcag tacatccctt tataaacatc taagaaccca tactgtggag aaatcctaca
961gctgtaaaga atgtggtaaa tccttcagcc gaaggtcagg cctttttata catcaaaaaa
1021ttcatgctga agaaaaccct tgtaagtata atccgggtag gaaggcatct agttgcagca
1081catccctttc tggatgtcaa agaattcatt ctagaaagaa gtcctactta tgtaatgaat
1141gtggcaacac ctttaagtct agctcatccc ttcgttatca tcagagaatt cacactggag
1201agaagccttt taaatgtagt gaatgtggga gagccttcag ccagagtgcc tctcttattc
1261aacatgaaag aattcacacc ggagaaaagc cctatagatg caatgaatgt gggaaaggct
1321ttacttctat ttcacgactt aatagacacc gaatcattca tactggagag aagttttata
1381attgtaatga atgtggtaaa gccttaagct cccactcaac acttattatt cacgagcgaa
1441ttcatactgg agaaaaacca tgtaaatgta aagtatgtgg aaaagccttc agacagagtt
1501cagctctcat tcaacatcag agaatgcata ctggagaaag accctataaa tgtaacgagt
1561gtgggaaaac attcaggtgt aactcatcac ttagtaaTCA CCAGAGAATT CATACTGGAG
1621AGAAACCATA TCGATGTGAG GAATGTGGGA TATCTTTTGG CCAAAGTTCA GCTCTTATTC
1681AGCATCGAAG GATTCATACA GGAGAAAAAC CCTTTAAATG TAATACATGT GGAAAAACTT
1741TTAGACAAAG CTCATCACGT ATTGCACATC AGAGAATTCA TACTGGAGAG AAACCCTATG
1801AATGTAATAC ATGTGGGAAA CTTTTCAACC ATAGGTCATC CCTTACTAAT CATTATAAAA
1861TTCATATCGA AGAGGACCCC TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1921CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1981AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATACA TCAATAACCC
2041CTTTTATCCG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)