Construct: ORF TRCN0000478654

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016744.1_s317c1
Derived from:
ccsbBroadEn_00634
DNA Barcode:
CGGCTAGGGTAGCTGAACACGAGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GH2 (2689)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478654
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2689 GH2 growth hormone 2 NM_002059.5 100% 100%
2 human 2688 GH1 growth hormone 1 NM_000515.5 94.6% 93% (many diffs)
3 human 2689 GH2 growth hormone 2 NM_022556.4 93% 93% 171_172ins45
4 human 1442 CSH1 chorionic somatomammotropin... NM_001317.6 90.6% 79.7% (many diffs)
5 human 1443 CSH2 chorionic somatomammotropin... NM_020991.3 90.1% 80.1% (many diffs)
6 human 2688 GH1 growth hormone 1 NM_022559.4 88.1% 86.6% (many diffs)
7 human 2689 GH2 growth hormone 2 NM_022558.4 87.5% 60.6% 452_453insGTGG;648_735del
8 human 1444 CSHL1 chorionic somatomammotropin... NM_022579.3 87.1% 74.7% (many diffs)
9 human 1444 CSHL1 chorionic somatomammotropin... NM_022581.3 81.4% 68.2% (many diffs)
10 human 2688 GH1 growth hormone 1 NM_022560.4 77.8% 76% (many diffs)
11 human 1444 CSHL1 chorionic somatomammotropin... NM_001321069.2 76.4% 66.8% (many diffs)
12 human 2689 GH2 growth hormone 2 NM_022557.4 72.5% 53.8% (many diffs)
13 human 1444 CSHL1 chorionic somatomammotropin... NM_001321068.2 66.9% 58% (many diffs)
14 human 1444 CSHL1 chorionic somatomammotropin... NM_001321067.2 66.8% 56.6% (many diffs)
15 human 1443 CSH2 chorionic somatomammotropin... NM_022644.3 66.3% 54.5% (many diffs)
16 human 1444 CSHL1 chorionic somatomammotropin... NM_022580.3 57.4% 48.3% (many diffs)
17 human 1444 CSHL1 chorionic somatomammotropin... NM_001318.4 53.3% 45.6% (many diffs)
18 human 1443 CSH2 chorionic somatomammotropin... NM_022645.2 51.6% 47% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
717
ORF length:
651
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tgcaggctcc cggacgtccc tgctcctggc ttttggcctg ctctgcctgt
121cctggcttca agagggcagt gccttcccaa ccattccctt atccaggctt tttgacaacg
181ctatgctccg cgcccgtcgc ctgtaccagc tggcatatga cacctatcag gagtttgaag
241aagcctatat cctgaaggag cagaagtatt cattcctgca gaacccccag acctccctct
301gcttctcaga gtctattcca acaccttcca acagggtgaa aacgcagcag aaatctaacc
361tagagctgct ccgcatctcc ctgctgctca tccagtcatg gctggagccc gtgcagctcc
421TCAGGAGCGT CTTCGCCAAC AGCCTGGTGT ATGGCGCCTC GGACAGCAAC GTCTATCGCC
481ACCTGAAGGA CCTAGAGGAA GGCATCCAAA CGCTGATGTG GAGGCTGGAA GATGGCAGCC
541CCCGGACTGG GCAGATCTTC AATCAGTCCT ACAGCAAGTT TGACACAAAA TCGCACAACG
601ATGACGCACT GCTCAAGAAC TACGGGCTGC TCTACTGCTT CAGGAAGGAC ATGGACAAGG
661TCGAGACATT CCTGCGCATC GTGCAGTGCC GCTCTGTGGA GGGCAGCTGT GGCTTCTACC
721CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
781TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
841ATATATCTTG TGGAAAGGAC GACGGCTAGG GTAGCTGAAC ACGAGTACGC GTTAAGTCga
901caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)