Construct: ORF TRCN0000478704
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016216.1_s317c1
- Derived from:
- ccsbBroadEn_12077
- DNA Barcode:
- TGACCCTCATCGTCCTTGATTTGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RNF111 (54778)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478704
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54778 | RNF111 | ring finger protein 111 | NM_001270529.2 | 13.9% | 13.9% | 1_2544del |
| 2 | human | 54778 | RNF111 | ring finger protein 111 | XM_017022343.1 | 13.9% | 13.9% | 1_2544del |
| 3 | human | 54778 | RNF111 | ring finger protein 111 | NM_017610.8 | 13.8% | 13.8% | 1_2547del |
| 4 | human | 54778 | RNF111 | ring finger protein 111 | XM_017022342.1 | 13.8% | 13.8% | 1_2547del |
| 5 | human | 54778 | RNF111 | ring finger protein 111 | XM_017022340.2 | 13.7% | 13.7% | 1_2544del;2735_2758del |
| 6 | human | 54778 | RNF111 | ring finger protein 111 | XM_017022341.1 | 13.7% | 13.7% | 1_2544del;2735_2758del |
| 7 | human | 54778 | RNF111 | ring finger protein 111 | NM_001270530.1 | 13.7% | 13.7% | 1_2547del;2738_2761del |
| 8 | human | 54778 | RNF111 | ring finger protein 111 | XM_017022338.2 | 13.7% | 13.7% | 1_2547del;2738_2761del |
| 9 | human | 54778 | RNF111 | ring finger protein 111 | XM_017022339.2 | 13.7% | 13.7% | 1_2571del |
| 10 | human | 54778 | RNF111 | ring finger protein 111 | NM_001270528.2 | 13.7% | 13.7% | 1_2574del |
| 11 | human | 54778 | RNF111 | ring finger protein 111 | XM_017022337.2 | 13.6% | 13.6% | 1_2571del;2762_2785del |
| 12 | human | 54778 | RNF111 | ring finger protein 111 | NM_001330331.2 | 13.6% | 13.6% | 1_2574del;2765_2788del |
| 13 | human | 54778 | RNF111 | ring finger protein 111 | XM_006720579.3 | 13.6% | 13.6% | 1_2574del;2765_2788del |
| 14 | human | 54778 | RNF111 | ring finger protein 111 | XM_017022336.1 | 13.5% | 13.5% | 1_2616del |
| 15 | human | 54778 | RNF111 | ring finger protein 111 | XM_011521699.2 | 13.5% | 13.5% | 1_2631del |
| 16 | human | 54778 | RNF111 | ring finger protein 111 | XM_006720575.3 | 13.3% | 13.3% | 1_2643del;2834_2857del |
| 17 | human | 54778 | RNF111 | ring finger protein 111 | XM_011521697.3 | 13.3% | 13.3% | 1_2655del;2846_2869del |
| 18 | human | 54778 | RNF111 | ring finger protein 111 | XM_011521696.2 | 13.2% | 13.2% | 1_2682del |
| 19 | human | 54778 | RNF111 | ring finger protein 111 | XM_011521694.2 | 13.1% | 13.1% | 1_2682del;2873_2896del |
| 20 | mouse | 93836 | Rnf111 | ring finger 111 | XM_006511587.3 | 13.3% | 13.8% | (many diffs) |
| 21 | mouse | 93836 | Rnf111 | ring finger 111 | XM_006511586.2 | 13.3% | 13.8% | (many diffs) |
| 22 | mouse | 93836 | Rnf111 | ring finger 111 | NM_033604.2 | 13.2% | 13.7% | (many diffs) |
| 23 | mouse | 93836 | Rnf111 | ring finger 111 | XM_006511582.2 | 13% | 13.6% | (many diffs) |
| 24 | mouse | 93836 | Rnf111 | ring finger 111 | XM_006511583.3 | 13% | 13.6% | (many diffs) |
| 25 | mouse | 93836 | Rnf111 | ring finger 111 | XM_006511584.2 | 13% | 13.6% | (many diffs) |
| 26 | mouse | 93836 | Rnf111 | ring finger 111 | XM_006511581.3 | 12.1% | 12.6% | (many diffs) |
| 27 | mouse | 93836 | Rnf111 | ring finger 111 | XM_006511580.3 | 12% | 12.5% | (many diffs) |
| 28 | mouse | 93836 | Rnf111 | ring finger 111 | XM_017313709.1 | 12% | 12.5% | (many diffs) |
| 29 | mouse | 93836 | Rnf111 | ring finger 111 | XM_006511578.3 | 12% | 12.5% | (many diffs) |
| 30 | mouse | 93836 | Rnf111 | ring finger 111 | XM_006511577.3 | 11.9% | 12.4% | (many diffs) |
| 31 | mouse | 93836 | Rnf111 | ring finger 111 | XM_011242841.2 | 11.9% | 12.4% | (many diffs) |
| 32 | mouse | 93836 | Rnf111 | ring finger 111 | XM_006511576.2 | 11.9% | 12.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 477
- ORF length:
- 411
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggt tcctgatatg gcaggctatc ctcacatccg ttacatttca tcaggattgg 121 atggaacatc attcagaggt cctttcaggg gcaattttGA GGAACTGATT CATTTGGAAG 181 AAAGATTAGG CAATGTCAAT CGTGGAGCAT CCCAGGGGAC AATTGAAAGA TGTACATATC 241 CACATAAATA CAAAAAGAGG AAACTGCACT GCAAACAAGA TGGGGAAGAA GGGACTGAGG 301 AAGACACAGA GGAAAAATGT ACTATCTGTT TGTCTATTTT AGAGGAAGGT GAAGATGTGA 361 GACGTCTTCC ATGTATGCAC CTTTTCCACC AAGTGTGTGT TGACCAATGG TTGATTACCA 421 ATAAGAAGTG CCCCATATGC AGAGTGGACA TTGAGGCCCA GCTGCCAAGT GAAAGTTGCC 481 CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC 541 TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT 601 ATATATCTTG TGGAAAGGAC GATGACCCTC ATCGTCCTTG ATTTGCACGC GTTAAGTCga 661 caatcaacct ctggattaca aaatttgtga aagatt