Construct: ORF TRCN0000478712
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004563.1_s317c1
- Derived from:
- ccsbBroadEn_03253
- DNA Barcode:
- GCTTTATTCTGTTAGGATTAGCGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PAIP2 (51247)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478712
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51247 | PAIP2 | poly(A) binding protein int... | NM_001033112.2 | 100% | 100% | |
| 2 | human | 51247 | PAIP2 | poly(A) binding protein int... | NM_016480.5 | 100% | 100% | |
| 3 | human | 51247 | PAIP2 | poly(A) binding protein int... | XM_011543428.1 | 100% | 100% | |
| 4 | human | 51247 | PAIP2 | poly(A) binding protein int... | XM_017009522.1 | 100% | 100% | |
| 5 | human | 51247 | PAIP2 | poly(A) binding protein int... | XM_017009523.2 | 100% | 100% | |
| 6 | human | 51247 | PAIP2 | poly(A) binding protein int... | NR_109830.1 | 25.1% | 1_175del;313_314insATAG;553_1494del | |
| 7 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | NM_026420.2 | 95.8% | 96% | (many diffs) |
| 8 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | XM_011246987.2 | 95.8% | 96% | (many diffs) |
| 9 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | XM_011246988.2 | 95.8% | 96% | (many diffs) |
| 10 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | XM_011246989.1 | 95.8% | 96% | (many diffs) |
| 11 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | XM_011246990.2 | 95.8% | 96% | (many diffs) |
| 12 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | XM_017317972.1 | 95.8% | 96% | (many diffs) |
| 13 | mouse | 67869 | Paip2 | polyadenylate-binding prote... | XM_017317973.1 | 95.8% | 96% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 79
- ORF end:
- 460
- ORF length:
- 381
- Sequence:
-
1 TTCAAAGTTT TTTTCTTCCA TTTCAGGTGT CGTGAGGCTA GCATCGATTG ATCAACAAGT 61 TTGTACAAAA AAGTTGGCAT GAAAGATCCA AGTCGCAGCA GTACTAGCCC AAGCATCATC 121 AATGAAGATG TGATTATTAA CGGTCATTCT CATGAAGATG ACAATCCATT TGCAGAGTAC 181 ATGTGGATGG AAAATGAAGA AGAATTCAAC AGACAAATAG AAGAGGAGTT ATGGGAAGAA 241 GAATTTATTG AACGCTGTTT CCAAGAAATG CTGGAAGAGG AAGAAGAGCA TGAATGGTTT 301 ATTCCAGCTC GAGATCTCCC ACAAACTATG GACCAAATCC AAGACCAGTT TAATGACCTT 361 GTTATCAGTG ATGGCTCTTC TCTGGAAGAT CTTGTGGTCA AGAGCAATCT GAATCCAAAT 421 GCAAAGGAGT TTGTTCCTGG GGTGAAGTAC GGAAATATTT GCCCAACTTT CTTGTACAAA 481 GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA 541 TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG 601 GACGAGCTTT ATTCTGTTAG GATTAGCGCA CGCGTTAAGT Cgacaatcaa cctctggatt 661 acaaaatttg tgaaagatt