Construct: ORF TRCN0000478756
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006139.1_s317c1
- Derived from:
- ccsbBroadEn_04317
- DNA Barcode:
- GTTATTTAATCTTCACTGGGCATT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KATNAL1 (84056)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478756
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84056 | KATNAL1 | katanin catalytic subunit A... | NM_001014380.3 | 100% | 100% | |
| 2 | human | 84056 | KATNAL1 | katanin catalytic subunit A... | NM_032116.5 | 100% | 100% | |
| 3 | human | 84056 | KATNAL1 | katanin catalytic subunit A... | XM_005266574.3 | 100% | 100% | |
| 4 | human | 84056 | KATNAL1 | katanin catalytic subunit A... | XM_024449423.1 | 100% | 100% | |
| 5 | human | 84056 | KATNAL1 | katanin catalytic subunit A... | XM_024449424.1 | 100% | 100% | |
| 6 | human | 84056 | KATNAL1 | katanin catalytic subunit A... | XM_017020791.2 | 65.7% | 65.7% | 0_1ins504 |
| 7 | human | 84056 | KATNAL1 | katanin catalytic subunit A... | XM_017020792.2 | 65.7% | 65.7% | 0_1ins504 |
| 8 | human | 84056 | KATNAL1 | katanin catalytic subunit A... | XM_017020793.2 | 65.7% | 65.7% | 0_1ins504 |
| 9 | human | 84056 | KATNAL1 | katanin catalytic subunit A... | XM_024449425.1 | 65.7% | 65.7% | 0_1ins504 |
| 10 | mouse | 231912 | Katnal1 | katanin p60 subunit A-like 1 | NM_153572.2 | 85.3% | 94.2% | (many diffs) |
| 11 | mouse | 231912 | Katnal1 | katanin p60 subunit A-like 1 | XM_006504828.3 | 85.3% | 94.2% | (many diffs) |
| 12 | mouse | 231912 | Katnal1 | katanin p60 subunit A-like 1 | XM_006504829.3 | 85.3% | 94.2% | (many diffs) |
| 13 | mouse | 231912 | Katnal1 | katanin p60 subunit A-like 1 | XR_868674.2 | 50.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1536
- ORF length:
- 1470
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa tttggctgag atttgtgata atgcaaagaa aggaagagaa tatgcccttc 121 ttggaaatta cgactcatca atggtatatt accagggggt gatgcagcag attcagagac 181 attgccagtc agtcagagat ccagctatca aaggcaaatg gcaacaggtt cggcaggaat 241 tattggagga atatgaacaa gttaaaagta ttgtcagcac tttagaaagt tttaaaattg 301 acaagcctcc agatttccct gtgtcctgtc aagatgaacc atttagagat cctgctgttt 361 ggccaccccc tgttcctgca gaacacagag ctccacctca gatcaggcgt cccaatcgag 421 aagtaagacc tctgaggaaa gaaatggcag gagtaggagc ccggggacct gtaggccgag 481 cacatcctat atcaaagagt gaaaagcctt ctacaagtag ggacaaggac tatagagcaa 541 gagggagaga tgacaaggga aggaagaata tgcaagatgg tgcaagtgat ggtgaaatgc 601 caaaatttga tggtgctggt tatgataagg atctggtgga agcccttgaa agagacattg 661 tatccaggaa tcctagcatt cattgggatg acatagcaga tctggaagaa gctaagaagt 721 tgctaaggga agctgttgtt cttccaatgt ggatgcctga ctttttcaaa gggattagaa 781 ggccatggaa gggtgtactg atggttggac ccccaggcac tggtaaaact atgctagcta 841 aagctgttgc cactgaatgt ggtacaacat tcttcaacgt ttcgtcttct acactgacat 901 ctaaatacag aggtgaatct gagaagttag ttcgtctgtt gtttgagatg gctagatttt 961 atgcccctac cacgatcttc attgatgaga tagattctat ctgcagtcga agaggaacct 1021 ctgatgaaca tgaggcaagt cgcagggtca agtctgaact gctcattcag atggatggag 1081 ttggaggagc tttagaaaat gatgatcctt ccaaaatggt tatggtattg gctgctacta 1141 atttcccgtg ggacattgat gaagctttgc gaagaaggtt agaaaaaagg atatatatac 1201 cTCTCCCAAC AGCAAAAGGA AGAGCTGAGC TTCTGAAGAT CAACCTTCGT GAGGTCGAAT 1261 TAGATCCTGA TATTCAACTG GAAGATATAG CCGAGAAGAT TGAGGGCTAT TCTGGTGCTG 1321 ACATCACTAA TGTTTGCAGG GATGCCTCTT TAATGGCAAT GAGACGGCGT ATCAATGGCT 1381 TAAGTCCAGA AGAAATCCGT GCACTTTCTA AAGAGGAACT TCAGATGCCT GTTACCAAAG 1441 GAGACTTTGA ATTGGCCCTA AAGAAAATTG CTAAGTCTGT CTCTGCTGCA GACTTGGAGA 1501 AGTATGAAAA ATGGATGGTT GAATTTGGAT CTGCTTGCCC AACTTTCTTG TACAAAGTGG 1561 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 1621 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 1681 AGTTATTTAA TCTTCACTGG GCATTACGCG TTAAGTCgac aatcaacctc tggattacaa 1741 aatttgtgaa agatt